updated to lastest versions of files. Plus ZFIN descriptions file

misc-scripts/xref_mapping/xref_config.ini

@@ -967,7 +967,7 @@ prio_descr      = main
 parser          = GOSlimParser
 release_uri     =
 data_uri        = script:
-#data_uri        = script:host=>ens-staging1,dbname=>ensembl_ontology_61,
+#data_uri        = script:host=>ens-staging1,dbname=>ensembl_ontology_62,
 
 [source goslim_goa::EG]
 # Used by Ensembl Genomes
@@ -1106,7 +1106,6 @@ prio_descr      = vega
 parser          = HGNC_ENSTParser
 release_uri     =
 data_uri        = script:
-#data_uri        = script:vuser=>ensro,vhost=>ens-research,vdbname=>st3_homo_sapiens_vega_59_20100903,vport=>3306,cuser=>ensro,chost=>ens-staging1,cport=>3306,cdbname=>homo_sapiens_core_61_37f,
 
 
 [source HGNC::homo_sapiens#02]
@@ -1440,7 +1439,6 @@ prio_descr      = vega
 parser          = MGI_Vega_Parser
 release_uri     =
 data_uri        = script:
-#data_uri        = script:vhost=>ens-research,vport=>3306,vdbname=>st3_mus_musculus_vega_61_20100917,chost=>ens-staging2,cport=>3306,cdbname=>mus_musculus_core_61_37n,
 
 [source MGI::mus_musculus#05]
 # Used by mus_musculus
@@ -1463,7 +1461,7 @@ priority        = 3
 prio_descr      = ccds
 parser          = MGI_CCDS_Parser
 release_uri     =
-data_uri        = script:wget=>ftp://ftp.ncbi.nlm.nih.gov/pub/CCDS/current_mouse/CCDS.20071128.txt,
+data_uri        = script:wget=>ftp://ftp.ncbi.nlm.nih.gov/pub/CCDS/current_mouse/CCDS.20110124.txt,
 
 
 
@@ -2458,7 +2456,6 @@ prio_descr      = curated with transcript number postfix
 parser          = curated_transcriptParser
 release_uri     = 
 data_uri        = script:
-#data_uri        = script:vhost=>ens-research,vdbname=>st3_homo_sapiens_vega_59_20100903,vuser=>ensro,vport=>3306,chost=>ens-staging,cport=>3306,cdbname=>homo_sapiens_core_61_37f,
 
 
 [source HGNC_transcript_name]
@@ -2489,7 +2486,6 @@ prio_descr      =
 parser          = curated_transcriptParser
 release_uri     = 
 data_uri        = script:
-#data_uri        = script:vhost=>ens-research,vport=>3306,vdbname=>st3_mus_musculus_vega_61_20100917,chost=>ens-staging2,cport=>3306,cdbname=>mus_musculus_core_61_37n,
 
 
 [source MGI_automatic_transcript::mus_musculus]
@@ -2578,7 +2574,7 @@ data_uri        = ftp://ftp.xenbase.org/pub/GenePageReports/GenePageEnsemblModel
 # Used by danio_rerio
 name            = ZFIN_ID
 download        = Y
-order           = 30
+order           = 31
 priority        = 2
 prio_descr      = uniprot/refseq
 parser          = ZFINParser
@@ -2597,7 +2593,8 @@ priority        = 1
 prio_descr      = vega
 parser          = ZFIN_DARTParser
 release_uri     = 
-data_uri        = script:vuser=>ensro,vhost=>ens-staging,vdbname=>danio_rerio_vega_61_9a,vport=>3306,
+data_uri        = script:
+#vuser=>ensro,vhost=>ens-staging,vdbname=>danio_rerio_vega_62_9b,vport=>3306,
 
 [source ZFIN_ID::danio_rerio#03]
 # Used by danio_rerio
@@ -2608,7 +2605,8 @@ priority        = 10
 prio_descr      = description_only
 parser          = ZFINDescParser
 release_uri     = 
-data_uri        = http://zfin.org/data_transfer/Downloads/genetic_markers.txt
+#data_uri        = http://zfin.org/data_transfer/Downloads/genetic_markers.txt
+data_uri        = ftp://zfin.org/pub/transfer/MEOW/zfin_genes.txt
 
 [source ZFIN_ID_curated_transcript::danio_rerio]
 name            = ZFIN_ID_curated_transcript_notransfer
@@ -3366,7 +3364,7 @@ source          = ZFIN_ID::danio_rerio#01
 source          = ZFIN_ID::danio_rerio#02
 source          = ZFIN_ID::danio_rerio#03
 source          = ncRNA::MULTI
-#source          = ZFIN_ID_curated_transcript::danio_rerio
+source          = ZFIN_ID_curated_transcript::danio_rerio
 
 [species dasypus_novemcinctus]
 taxonomy_id     = 9361