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ensembl-gh-mirror
ensembl
Commits
aae5aafa
Commit
aae5aafa
authored
15 years ago
by
Jeremy Henty
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Backed out the previous change - inappropriate for HEAD.
parent
296112ae
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modules/Bio/EnsEMBL/Slice.pm
+0
-35
0 additions, 35 deletions
modules/Bio/EnsEMBL/Slice.pm
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modules/Bio/EnsEMBL/Slice.pm
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View file @
aae5aafa
...
...
@@ -2061,41 +2061,6 @@ sub get_all_Transcripts {
}
=head2 get_all_TranscriptBestSupportingFeatures
Arg [1] : (optional) string $logic_name
the logic name of the type of features to obtain
Arg [2] : (optional) string $db_type
Example : @transcripts = @{$slice->get_all_TranscriptBestSupportingFeatures};
Description: Gets the best supporting align features for each exon
in any transcript which overlaps this slice.
Returntype : reference to a list of Bio::EnsEMBL::BaseAlignFeatures
Exceptions : none
Caller : general
Status : Development
=cut
sub
get_all_TranscriptBestSupportingFeatures
{
my
$self
=
shift
;
my
$load_exons
=
1
;
my
$logic_name
=
shift
;
my
$dbtype
=
shift
;
if
(
!
$self
->
adaptor
())
{
warning
('
Cannot get Transcripts without attached adaptor
');
return
[]
;
}
# debugging
my
$method
=
"
get_all_TranscriptBestSupportingFeatures
";
die
sprintf
"
%s::%s()
\n
Died
",
__PACKAGE__
,
$method
;
my
$transcripts
=
$self
->
get_all_Transcripts
(
$load_exons
,
$logic_name
,
$dbtype
);
return
;
}
=head2 get_all_Exons
Arg [1] : none
...
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