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ensembl-gh-mirror
ensembl
Commits
ab711d25
Commit
ab711d25
authored
16 years ago
by
Patrick Meidl
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changed LINUX86 to X86_64 lsf host type
parent
b5017e3a
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1
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1 changed file
misc-scripts/id_mapping/default.conf
+10
-8
10 additions, 8 deletions
misc-scripts/id_mapping/default.conf
with
10 additions
and
8 deletions
misc-scripts/id_mapping/default.conf
+
10
−
8
View file @
ab711d25
;
for
dry
runs
,
no
data
is
written
to
the
database
dry_run
=
1
dry_run
=
0
;
log
level
,
useful
values
are
'INFO'
or
'DEBUG'
loglevel
=
DEBUG
;
paths
dumppath
= /
lustre
/
work
1
/
ensembl
/
pm2
/
idmapping
/
perl
/
200
70903
dumppath
= /
lustre
/
scratch
1
/
ensembl
/
pm2
/
idmapping
/
perl
/
200
8
-
04
-
01
;
prepend
this
path
to
your
'log'
parameter
;
will
default
to
"$dumppath/log"
if
not
set
...
...
@@ -29,8 +29,8 @@ targetdbname = pm2_pan_troglodytes_core_41_21
;
chromosomes
=
22
;
LSF
parameters
;
lsf_opt_run
=
"-M5
0
00000 -R'select[type==
LINUX
64 && mem>500
0
],rusage[mem=5
0
00]'"
;
lsf_opt_dump_cache
=
"-M1700000 -R'select[type==
LINUX
64 && mem>1700],rusage[mem=1700]'"
lsf_opt_run
=
"-M
3
500000 -R'select[type==
X86_
64 && mem>
3
500],rusage[mem=
3
500]'"
;
lsf_opt_dump_cache
=
"-M1700000 -R'select[type==
X86_
64 && mem>1700],rusage[mem=1700]'"
;
ScoreBuilder
min_exon_length
=
15
...
...
@@ -38,13 +38,15 @@ exonerate_path = /usr/local/ensembl/bin/exonerate-0.8.2
exonerate_threshold
=
0
.
5
exonerate_jobs
=
0
exonerate_bytes_per_job
=
250000
exonerate_extra_params
=
'--bestn
4
0'
exonerate_extra_params
=
'--bestn
10
0'
transcript_score_threshold
=
0
synteny_rescore_jobs
=
20
;
lsf_opt_synteny_rescore
=
;
upload
results
into
db
upload_events
=
0
upload_stable_ids
=
0
upload_archive
=
0
upload_events
=
1
upload_stable_ids
=
1
upload_archive
=
1
;
URL
prefix
for
navigation
urlprefix
=
http
://
jun2007
.
archive
.
ensembl
.
org
/
Pan_troglodytes
/
geneview
?
gene
=
...
...
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