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Commit ab711d25 authored by Patrick Meidl's avatar Patrick Meidl
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changed LINUX86 to X86_64 lsf host type

parent b5017e3a
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; for dry runs, no data is written to the database ; for dry runs, no data is written to the database
dry_run = 1 dry_run = 0
; log level, useful values are 'INFO' or 'DEBUG' ; log level, useful values are 'INFO' or 'DEBUG'
loglevel = DEBUG loglevel = DEBUG
; paths ; paths
dumppath = /lustre/work1/ensembl/pm2/idmapping/perl/20070903 dumppath = /lustre/scratch1/ensembl/pm2/idmapping/perl/2008-04-01
; prepend this path to your 'log' parameter ; prepend this path to your 'log' parameter
; will default to "$dumppath/log" if not set ; will default to "$dumppath/log" if not set
...@@ -29,8 +29,8 @@ targetdbname = pm2_pan_troglodytes_core_41_21 ...@@ -29,8 +29,8 @@ targetdbname = pm2_pan_troglodytes_core_41_21
;chromosomes = 22 ;chromosomes = 22
; LSF parameters ; LSF parameters
;lsf_opt_run = "-M5000000 -R'select[type==LINUX64 && mem>5000],rusage[mem=5000]'" lsf_opt_run = "-M3500000 -R'select[type==X86_64 && mem>3500],rusage[mem=3500]'"
;lsf_opt_dump_cache = "-M1700000 -R'select[type==LINUX64 && mem>1700],rusage[mem=1700]'" ;lsf_opt_dump_cache = "-M1700000 -R'select[type==X86_64 && mem>1700],rusage[mem=1700]'"
; ScoreBuilder ; ScoreBuilder
min_exon_length = 15 min_exon_length = 15
...@@ -38,13 +38,15 @@ exonerate_path = /usr/local/ensembl/bin/exonerate-0.8.2 ...@@ -38,13 +38,15 @@ exonerate_path = /usr/local/ensembl/bin/exonerate-0.8.2
exonerate_threshold = 0.5 exonerate_threshold = 0.5
exonerate_jobs = 0 exonerate_jobs = 0
exonerate_bytes_per_job = 250000 exonerate_bytes_per_job = 250000
exonerate_extra_params = '--bestn 40' exonerate_extra_params = '--bestn 100'
transcript_score_threshold = 0 transcript_score_threshold = 0
synteny_rescore_jobs = 20
;lsf_opt_synteny_rescore =
; upload results into db ; upload results into db
upload_events = 0 upload_events = 1
upload_stable_ids = 0 upload_stable_ids = 1
upload_archive = 0 upload_archive = 1
; URL prefix for navigation ; URL prefix for navigation
urlprefix = http://jun2007.archive.ensembl.org/Pan_troglodytes/geneview?gene= urlprefix = http://jun2007.archive.ensembl.org/Pan_troglodytes/geneview?gene=
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