Commit b5e17a69 authored by Magali Ruffier's avatar Magali Ruffier
Browse files

added vega runs in core handover config

parent c2ea0093
......@@ -66,7 +66,7 @@ sub pipeline_analyses {
'3->C' => ['CodingDensity'],
'C->3' => ['NonCodingDensity'],
'3->A' => ['PercentRepeat', 'CodingDensity', 'NonCodingDensity', 'PercentGC'],
'2->A' => ['GeneGC', 'PepStats', 'GeneCount', 'ConstitutiveExons'],
'2->A' => ['GeneGC', 'PepStats', 'GeneCount', 'ConstitutiveExons', 'ConstitutiveExonsVega', 'PepStatsVega'],
'A->1' => ['Notify'],
},
},
......@@ -94,6 +94,31 @@ sub pipeline_analyses {
-rc_name => 'normal',
},
{
-logic_name => 'ConstitutiveExonsVega',
-module => 'Bio::EnsEMBL::Pipeline::Production::ConstitutiveExons',
-parameters => {
dbtype => 'vega',
},
-max_retry_count => 5,
-hive_capacity => 10,
-rc_name => 'normal',
-can_be_empty => 1,
},
{
-logic_name => 'PepStatsVega',
-module => 'Bio::EnsEMBL::Pipeline::Production::PepStats',
-parameters => {
tmpdir => '/tmp', binpath => '/software/pubseq/bin/emboss',
dbtype => 'vega',
},
-max_retry_count => 5,
-hive_capacity => 10,
-rc_name => 'mem',
-can_be_empty => 1,
},
{
-logic_name => 'GeneCount',
-module => 'Bio::EnsEMBL::Pipeline::Production::GeneCount',
......
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