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ensembl-gh-mirror
ensembl
Commits
c1325273
Commit
c1325273
authored
18 years ago
by
Ian Longden
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new reason added
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dafa90c8
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misc-scripts/unmapped_reason/unmapped_reason.txt
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misc-scripts/unmapped_reason/unmapped_reason.txt
misc-scripts/unmapped_reason/update_unmapped_reasons.pl
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misc-scripts/unmapped_reason/update_unmapped_reasons.pl
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misc-scripts/unmapped_reason/unmapped_reason.txt
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c1325273
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@@ -13,3 +13,4 @@
14 Failed to match at thresholds Unable to match at the thresholds of 99% for the query or 99% for the target
15 Failed to match at thresholds Unable to match at the thresholds of 100% for the query or 100% for the target
16 Failed to match at thresholds Unable to match at the thresholds of 55% for the query or 55% for the target
17 Parent xref failed to match Unable to match as parent xref was not mapped
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misc-scripts/unmapped_reason/update_unmapped_reasons.pl
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c1325273
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@@ -116,10 +116,10 @@ sub usage {
E.g.:
#update 2 databases
perl update_unmapped_reasons.pl -host ecs1c -file
external_dbs
.txt -user ensadmin -pass secret -dbnames homo_sapiens_core_14_33 -dbnames mus_musculus_core_14_30
perl update_unmapped_reasons.pl -host ecs1c -file
unmapped_reason
.txt -user ensadmin -pass secret -dbnames homo_sapiens_core_14_33 -dbnames mus_musculus_core_14_30
#update all core databases for release 14
perl update_unmapped_reasons.pl -host ecs2d -file
external_dbs
.txt -user ensadmin -pass secret -release 14
perl update_unmapped_reasons.pl -host ecs2d -file
unmapped_reason
.txt -user ensadmin -pass secret -release 14
EOF
;
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