Commit c293d594 authored by Andreas Kusalananda Kähäri's avatar Andreas Kusalananda Kähäri
Browse files

Drop translation rescore penalty from 0.95 to 0.9, but raise non-mapped

gene rescore penalty from 0.8 to 0.9.
parent c6547925
......@@ -430,7 +430,7 @@ sub different_translation_rescore {
# PENALTY: The transcript stable ID is now on a transcript with a
# different translation.
$matrix->set_score( $entry->source(), $entry->target(),
0.95*$entry->score() );
0.9*$entry->score() );
$i++;
}
......@@ -484,7 +484,7 @@ sub non_mapped_gene_rescore {
# PENALTY: The transcript stable ID has been mapped to an
# un-mapped gene.
$matrix->set_score( $entry->source(), $entry->target(),
0.8*$entry->score() );
0.9*$entry->score() );
$i++;
}
}
......
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