changes to provide multispecies support and also to use a unified command line...
changes to provide multispecies support and also to use a unified command line processor (CliHelper)
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- misc-scripts/canonical_transcripts/set_canonical_transcripts.pl 409 additions, 327 deletions...cripts/canonical_transcripts/set_canonical_transcripts.pl
- misc-scripts/density_feature/gene_density_calc.pl 259 additions, 285 deletionsmisc-scripts/density_feature/gene_density_calc.pl
- misc-scripts/density_feature/percent_gc_calc.pl 171 additions, 174 deletionsmisc-scripts/density_feature/percent_gc_calc.pl
- misc-scripts/density_feature/repeat_coverage_calc.pl 269 additions, 257 deletionsmisc-scripts/density_feature/repeat_coverage_calc.pl
- misc-scripts/density_feature/seq_region_stats.pl 214 additions, 229 deletionsmisc-scripts/density_feature/seq_region_stats.pl
- misc-scripts/gene_gc.pl 73 additions, 88 deletionsmisc-scripts/gene_gc.pl
- misc-scripts/meta_coord/update_meta_coord.pl 65 additions, 71 deletionsmisc-scripts/meta_coord/update_meta_coord.pl
- misc-scripts/meta_levels.pl 68 additions, 84 deletionsmisc-scripts/meta_levels.pl
- misc-scripts/repeats/repeat-types.pl 66 additions, 83 deletionsmisc-scripts/repeats/repeat-types.pl
- misc-scripts/translation_attribs.pl 145 additions, 213 deletionsmisc-scripts/translation_attribs.pl
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