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ensembl-gh-mirror
ensembl
Commits
d1a7d97d
Commit
d1a7d97d
authored
Oct 28, 2009
by
Nathan Johnson
Browse files
Removed references to Oligo and Affy as now in efg
parent
a3d4c21a
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7 deletions
+3
-7
modules/Bio/EnsEMBL/DBSQL/AnalysisAdaptor.pm
modules/Bio/EnsEMBL/DBSQL/AnalysisAdaptor.pm
+1
-3
modules/Bio/EnsEMBL/DBSQL/DBAdaptor.pm
modules/Bio/EnsEMBL/DBSQL/DBAdaptor.pm
+2
-4
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modules/Bio/EnsEMBL/DBSQL/AnalysisAdaptor.pm
View file @
d1a7d97d
...
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@@ -193,14 +193,12 @@ SELECT DISTINCT analysis_id FROM %s |;
sub
feature_classes
{
# Can't think of a way to do this programatically, so hard-coded
return
qw(
AffyFeature
DensityFeature
DnaAlignFeature
Gene
PredictionTranscript
MarkerFeature
OligoFeature
ProteinAlignFeature
ProteinAlignFeature
ProteinFeature
QtlFeature
RepeatFeature
...
...
modules/Bio/EnsEMBL/DBSQL/DBAdaptor.pm
View file @
d1a7d97d
...
...
@@ -298,14 +298,12 @@ sub get_available_adaptors {
# Firstly those that just have an adaptor named after there object
# in the main DBSQL directory.
map
(
{
$_
=>
"
Bio::EnsEMBL::DBSQL::
${_}
Adaptor
"
}
qw(
AffyFeature AffyArray AffyProbe
Analysis ArchiveStableId Attribute
Analysis ArchiveStableId Attribute
AssemblyExceptionFeature AssemblyMapper CoordSystem
CompressedSequence DBEntry DnaAlignFeature
DensityFeature DensityType Exon
Gene KaryotypeBand MiscSet
MiscFeature OligoArray OligoFeature
OligoProbe PredictionTranscript PredictionExon
MiscFeature PredictionTranscript PredictionExon
ProteinFeature ProteinAlignFeature RepeatConsensus
RepeatFeature Sequence SimpleFeature
Slice SupportingFeature Transcript
...
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