Commit d3f1091c authored by Magali Ruffier's avatar Magali Ruffier
Browse files

added dna db for vega and otherfeatures databases

parent 95407922
......@@ -13,6 +13,10 @@ sub run {
my $species = $self->param('species');
my $dbtype = $self->param('dbtype');
my $dba = Bio::EnsEMBL::Registry->get_DBAdaptor($species, $dbtype);
if ( $dbtype =~ 'vega' || $dbtype =~ 'otherf' ) {
my $core_dba = Bio::EnsEMBL::Registry->get_DBAdaptor($species, 'core');
$dba->dnadb($core_dba);
}
my $helper = $dba->dbc()->sql_helper();
my %attrib_codes = $self->get_attrib_codes();
......@@ -116,7 +120,8 @@ sub get_attrib_codes {
sub dump_translation {
my ($self, $dba, $tmpfile) = @_;
my $helper = $dba->dbc()->sql_helper();
my $ta = Bio::EnsEMBL::Registry->get_adaptor($self->param('species'), 'core', 'translation');
my $dbtype = $self->param('dbtype');
my $ta = Bio::EnsEMBL::Registry->get_adaptor($self->param('species'), $dbtype, 'translation');
open(TMP, "> $tmpfile");
my $sql = q{
SELECT tl.translation_id
......
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