Commit d4150b49 authored by Magali Ruffier's avatar Magali Ruffier
Browse files

some documentation clean up

parent a19be844
......@@ -454,7 +454,7 @@ CREATE TABLE alt_allele_attrib (
/**
@table alt_allele_group_id
@table alt_allele_group
@desc A minimal table used for tracking unique alt_allele_group_id's. MySQL does not allow multiple autoincrement fields. Further information about a group could be added here at a later date.
@column alt_allele_group_id Primary key and only column.
......@@ -1950,7 +1950,8 @@ CREATE TABLE peptide_archive (
@desc Table structure for seq_region mapping between releases.
@column mapping_set_id Primary key, internal identifier.
@column schema_build E.g. 61_37f
@column internal_schema_build Schema version of the current database (eg 72_37)
@column external_schema_build Schema version of the database the comparison was run against (eg 71_37)
*/
......@@ -2146,9 +2147,7 @@ CREATE TABLE external_db (
external_db_id INTEGER UNSIGNED NOT NULL AUTO_INCREMENT,
db_name VARCHAR(100) NOT NULL,
db_release VARCHAR(255),
status ENUM('KNOWNXREF','KNOWN','XREF','PRED','ORTH',
'PSEUDO')
NOT NULL,
status ENUM('KNOWNXREF','KNOWN','XREF','PRED','ORTH', 'PSEUDO') NOT NULL,
priority INT NOT NULL,
db_display_name VARCHAR(255),
type ENUM('ARRAY', 'ALT_TRANS', 'ALT_GENE', 'MISC', 'LIT', 'PRIMARY_DB_SYNONYM', 'ENSEMBL'),
......@@ -2271,8 +2270,7 @@ CREATE TABLE object_xref (
object_xref_id INT(10) UNSIGNED NOT NULL AUTO_INCREMENT,
ensembl_id INT(10) UNSIGNED NOT NULL,
ensembl_object_type ENUM('RawContig', 'Transcript', 'Gene',
'Translation', 'Operon', 'OperonTranscript', 'Marker')
NOT NULL,
'Translation', 'Operon', 'OperonTranscript', 'Marker') NOT NULL,
xref_id INT(10) UNSIGNED NOT NULL,
linkage_annotation VARCHAR(255) DEFAULT NULL,
analysis_id SMALLINT UNSIGNED DEFAULT 0 NOT NULL,
......@@ -2358,8 +2356,7 @@ CREATE TABLE unmapped_object (
query_score DOUBLE,
target_score DOUBLE,
ensembl_id INT(10) UNSIGNED DEFAULT '0',
ensembl_object_type ENUM('RawContig','Transcript','Gene','Translation')
DEFAULT 'RawContig',
ensembl_object_type ENUM('RawContig','Transcript','Gene','Translation') DEFAULT 'RawContig',
parent VARCHAR(255) DEFAULT NULL,
PRIMARY KEY (unmapped_object_id),
......
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