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ensembl-gh-mirror
ensembl
Commits
d4150b49
Commit
d4150b49
authored
Aug 02, 2013
by
Magali Ruffier
Browse files
some documentation clean up
parent
a19be844
Changes
1
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9 deletions
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sql/table.sql
sql/table.sql
+6
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sql/table.sql
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d4150b49
...
...
@@ -454,7 +454,7 @@ CREATE TABLE alt_allele_attrib (
/**
@table alt_allele_group
_id
@table alt_allele_group
@desc A minimal table used for tracking unique alt_allele_group_id's. MySQL does not allow multiple autoincrement fields. Further information about a group could be added here at a later date.
@column alt_allele_group_id Primary key and only column.
...
...
@@ -1950,7 +1950,8 @@ CREATE TABLE peptide_archive (
@desc Table structure for seq_region mapping between releases.
@column mapping_set_id Primary key, internal identifier.
@column schema_build E.g. 61_37f
@column internal_schema_build Schema version of the current database (eg 72_37)
@column external_schema_build Schema version of the database the comparison was run against (eg 71_37)
*/
...
...
@@ -2146,9 +2147,7 @@ CREATE TABLE external_db (
external_db_id
INTEGER
UNSIGNED
NOT
NULL
AUTO_INCREMENT
,
db_name
VARCHAR
(
100
)
NOT
NULL
,
db_release
VARCHAR
(
255
),
status
ENUM
(
'KNOWNXREF'
,
'KNOWN'
,
'XREF'
,
'PRED'
,
'ORTH'
,
'PSEUDO'
)
NOT
NULL
,
status
ENUM
(
'KNOWNXREF'
,
'KNOWN'
,
'XREF'
,
'PRED'
,
'ORTH'
,
'PSEUDO'
)
NOT
NULL
,
priority
INT
NOT
NULL
,
db_display_name
VARCHAR
(
255
),
type
ENUM
(
'ARRAY'
,
'ALT_TRANS'
,
'ALT_GENE'
,
'MISC'
,
'LIT'
,
'PRIMARY_DB_SYNONYM'
,
'ENSEMBL'
),
...
...
@@ -2271,8 +2270,7 @@ CREATE TABLE object_xref (
object_xref_id
INT
(
10
)
UNSIGNED
NOT
NULL
AUTO_INCREMENT
,
ensembl_id
INT
(
10
)
UNSIGNED
NOT
NULL
,
ensembl_object_type
ENUM
(
'RawContig'
,
'Transcript'
,
'Gene'
,
'Translation'
,
'Operon'
,
'OperonTranscript'
,
'Marker'
)
NOT
NULL
,
'Translation'
,
'Operon'
,
'OperonTranscript'
,
'Marker'
)
NOT
NULL
,
xref_id
INT
(
10
)
UNSIGNED
NOT
NULL
,
linkage_annotation
VARCHAR
(
255
)
DEFAULT
NULL
,
analysis_id
SMALLINT
UNSIGNED
DEFAULT
0
NOT
NULL
,
...
...
@@ -2358,8 +2356,7 @@ CREATE TABLE unmapped_object (
query_score
DOUBLE
,
target_score
DOUBLE
,
ensembl_id
INT
(
10
)
UNSIGNED
DEFAULT
'0'
,
ensembl_object_type
ENUM
(
'RawContig'
,
'Transcript'
,
'Gene'
,
'Translation'
)
DEFAULT
'RawContig'
,
ensembl_object_type
ENUM
(
'RawContig'
,
'Transcript'
,
'Gene'
,
'Translation'
)
DEFAULT
'RawContig'
,
parent
VARCHAR
(
255
)
DEFAULT
NULL
,
PRIMARY
KEY
(
unmapped_object_id
),
...
...
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