Increase $long_slice_count from 100 to 125. Since the 'MT' chromosome

in human is number 118 in length, no gene, %gc, or SNP density features
were being calculated for it.

misc-scripts/density_feature/gene_density_calc.pl

@@ -7,8 +7,9 @@
 # It will only run on databases with genes ...
 #
 
-# I think the right thing here is too generate densities on the biggest 50-100 toplevel slices ...
-# The website will be happy with about 150 bins I think.
+# I think the right thing here is too generate densities on the longest
+# 125 toplevel slices... The website will be happy with about 150 bins I
+# think.
 
 
 use strict;
@@ -18,8 +19,8 @@ use Bio::EnsEMBL::DensityType;
 use Bio::EnsEMBL::DensityFeature;
 use Getopt::Long;
 
-my $bin_count = 150;
-my $long_slice_count = 100;
+my $bin_count        = 150;
+my $long_slice_count = 125;
 
 
 my ( $host, $user, $pass, $port, $dbname  );

misc-scripts/density_feature/percent_gc_calc.pl

@@ -36,9 +36,8 @@ my $db = new Bio::EnsEMBL::DBSQL::DBAdaptor(-host => $host,
 					    -dbname => $dbname);
 
 
-my $bin_count = 150;
-my $long_slice_count = 100;
-
+my $bin_count        = 150;
+my $long_slice_count = 125;
 
 #
 # Check wether the script should run on given database

misc-scripts/density_feature/variation_density.pl

 #
 # calculates the variation density from given core database
-# It finds Variation database by itself using naming convention s/core/variation/
+# It finds Variation database by itself using naming convention
+# s/core/variation/
 #
 #
 
@@ -17,8 +18,8 @@ use Getopt::Long;
 use Data::Dumper;
 $Data::Dumper::Maxdepth = 2;
 
-my $bin_count = 150;
-my $long_slice_count = 100;
+my $bin_count        = 150;
+my $long_slice_count = 125;
 
 my ( $host, $user, $pass, $port, $dbname  );