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ensembl-gh-mirror
ensembl
Commits
e3734666
Commit
e3734666
authored
Feb 12, 2010
by
Ian Longden
Browse files
gapped alignment at 100 percent
parent
1094a4e9
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misc-scripts/xref_mapping/XrefMapper/Methods/ExonerateGappedBest_100_perc_id.pm
...ing/XrefMapper/Methods/ExonerateGappedBest_100_perc_id.pm
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misc-scripts/xref_mapping/XrefMapper/Methods/ExonerateGappedBest_100_perc_id.pm
0 → 100644
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e3734666
package
XrefMapper::Methods::
ExonerateGappedBest_100_perc_id
;
use
XrefMapper::Methods::
ExonerateBasic
;
use
vars
'
@ISA
';
@ISA
=
qw{XrefMapper::Methods::ExonerateBasic}
;
sub
options
{
return
('
--gappedextension FALSE
',
'
--model
',
'
affine:local
',
'
--subopt
',
'
no
',
'
--bestn
',
'
1
');
}
sub
query_identity_threshold
{
return
100
;
}
sub
target_identity_threshold
{
return
100
;
}
1
;
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