gapped alignment at 100 percent

e3734666 · Ian Longden · 1094a4e9 · e3734666
Commit e3734666 authored Feb 12, 2010 by Ian Longden
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misc-scripts/xref_mapping/XrefMapper/Methods/ExonerateGappedBest_100_perc_id.pm ...ing/XrefMapper/Methods/ExonerateGappedBest_100_perc_id.pm +30 -0

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--- a/misc-scripts/xref_mapping/XrefMapper/Methods/ExonerateGappedBest_100_perc_id.pm
+++ b/misc-scripts/xref_mapping/XrefMapper/Methods/ExonerateGappedBest_100_perc_id.pm
+package XrefMapper::Methods::ExonerateGappedBest_100_perc_id;
+
+use XrefMapper::Methods::ExonerateBasic;
+
+use vars '@ISA';
+
+@ISA = qw{XrefMapper::Methods::ExonerateBasic};
+
+
+
+sub options {
+
+  return ('--gappedextension FALSE', '--model', 'affine:local', '--subopt', 'no', '--bestn', '1');
+
+}
+
+sub query_identity_threshold {
+
+  return 100;
+
+}
+
+sub target_identity_threshold {
+
+  return 100;
+
+}
+
+
+1;