Commit ec844c7a authored by Julio Fernandez Banet's avatar Julio Fernandez Banet
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Added 4 types that are used to link supporting features to Vega transcript/exons

so it can be easily identified which evidence was used by ensembl or havana in
a merged transcript
parent 74c30471
......@@ -283,7 +283,7 @@
#added for procavia capensis in release 51
171 NonGapHCov NonGapHCov
# attribute that shows if a transcript has an alternative ATG upstream of the defined start coding ATG
# attribute that shows if a supporting evidence was also used to build a Vega gene model
172 otter_support otter support Evidence ID that was used as supporting feature for building a gene in Vega
# Temporary attrib using during the merge of the havana and ensembl gene sets to stablish a relation between a
......@@ -308,6 +308,12 @@
184 TRGeneCount TR_gene Number of TR Genes
185 TRPsCount TR_pseudo Number of TR Pseudogenes
# attribute that shows if a supporting evidence was also used to build a Vega gene model
186 tp_otter_support otter protein transcript support Evidence ID that was used as supporting feature for building a gene in Vega
187 td_otter_support otter dna transcript support Evidence ID that was used as supporting feature for building a gene in Vega
188 ep_otter_support otter protein exon support Evidence ID that was used as supporting feature for building a gene in Vega
189 td_otter_support otter dna exon support Evidence ID that was used as supporting feature for building a gene in Vega
# Attributes like ie split_tscript incons_strands incons_phases is_folded unwanted_evidence
# exon_too_long contains_stops borked_coords low_complex evi_coverage are added by BlastMiniGenewise in the build process.
# They can be deleted out of transcript_attrib and attrib_type table
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