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Commit f5883deb authored by Glenn Proctor's avatar Glenn Proctor
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Don't write name projection info to database.

parent c77e76d8
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......@@ -40,7 +40,7 @@ foreach my $to ("chimp", "opossum", "dog", "cow", "macaque", "chicken", "xenopus
$o = "$dir/names_human_$to.out";
$e = "$dir/names_human_$to.err";
$n = substr("n_hum_$to", 0, 10); # job name display limited to 10 chars
system "bsub -o $o -e $e -J $n perl project_display_xrefs.pl $opts -from human -to $to -names -delete_names";
system "bsub -o $o -e $e -J $n perl project_display_xrefs.pl $opts -from human -to $to -names -delete_names -no_database";
}
# mouse to rat
......@@ -48,7 +48,7 @@ foreach my $to ("rat") { # don't need the loop but may add more species later
$o = "$dir/names_mouse_$to.out";
$e = "$dir/names_mouse_$to.err";
$n = substr("n_mou_$to", 0, 10);
system "bsub -o $o -e $e -J $n perl project_display_xrefs.pl $opts -from mouse -to $to -names -delete_names";
system "bsub -o $o -e $e -J $n perl project_display_xrefs.pl $opts -from mouse -to $to -names -delete_names -no_database";
}
# ----------------------------------------
......@@ -79,8 +79,12 @@ foreach my $to ("human", "rat", "dog", "chicken", "cow") {
$o = "$dir/go_mouse_$to.out";
$e = "$dir/go_mouse_$to.err";
$n = substr("g_mou_$to", 0, 10);
my $depend_job_name = substr("g_hum_$to", 0, 10);
my $d = "-w 'done($depend_job_name)'";
my $d;
if ($to eq 'human') { # no "human-human" to depend upon
$d = '';
} else {
my $depend_job_name = substr("g_hum_$to", 0, 10);
$d = "-w 'ended($depend_job_name)'";
}
system "bsub -o $o -e $e -J $n $d perl project_display_xrefs.pl $opts -from mouse -to $to -go_terms";
}
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