Skip to content
Snippets Groups Projects
Commit f7a7196d authored by Glenn Proctor's avatar Glenn Proctor
Browse files

Added name and GO term projections for 6 new species - dolphin, hyrax,...

Added name and GO term projections for 6 new species - dolphin, hyrax, tariser, megabat, kangaroo rat, alpaca.
parent 26e5b33d
No related branches found
No related tags found
No related merge requests found
......@@ -4,11 +4,11 @@ use strict;
# Remember to check/set the various config optons
# ------------------------------ config -------------------------------
my $release = 48;
my $release = 50;
my $base_dir = "/lustre/scratch1/ensembl/gp1/projections/";
my $conf = "release_48.ini"; # registry config file, specifies Compara location
my $conf = "release_50.ini"; # registry config file, specifies Compara location
# location of other databases
my $host = "ens-staging";
......@@ -32,7 +32,7 @@ if (! -e $dir) {
}
# common options
my $script_opts = "-conf $conf -host $host -user $user -port $port -pass $pass -version $release -release $release -quiet -nobackup";
my $script_opts = "-conf $conf -host $host -user $user -port $port -pass $pass -version $release -release $release -quiet";
#my $bsub_opts = "-R'select[myens-staging<200]'";
my $bsub_opts = "";
......@@ -61,6 +61,12 @@ my @names_1_1 = (["human", "chimp" ],
["human", "mouse_lemur" ],
["human", "horse" ],
["human", "orang_utan" ],
["human", "dolphin" ],
["human", "hyrax" ],
["human", "megabat" ],
["human", "tarsier" ],
["human", "alpaca" ],
["mouse", "kangaroo_rat" ],
["mouse", "rat" ]);
my @names_1_many = (["human", "zebrafish" ],
......@@ -92,8 +98,14 @@ my @go_terms = (["human", "mouse" ],
["human", "tree_shrew" ],
["human", "pika" ],
["human", "mouse_lemur" ],
["human", "horse" ],
["human", "orang_utan" ],
["human", "horse" ],
["human", "orang_utan" ],
["human", "dolphin" ],
["human", "hyrax" ],
["human", "megabat" ],
["human", "tarsier" ],
["human", "alpaca" ],
["human", "kangaroo_rat" ],
["mouse", "human" ],
["mouse", "rat" ],
["mouse", "dog" ],
......@@ -116,9 +128,15 @@ my @go_terms = (["human", "mouse" ],
["mouse", "squirrel" ],
["mouse", "tree_shrew" ],
["mouse", "pika" ],
["mouse", "horse" ],
["mouse", "orang_utan" ],
["mouse", "mouse_lemur" ],
["human", "horse" ],
["human", "orang_utan" ],
["mouse", "dolphin" ],
["mouse", "hyrax" ],
["mouse", "megabat" ],
["mouse", "tarsier" ],
["mouse", "alpaca" ],
["mouse", "kangaroo_rat" ],
["rat", "human" ],
["rat", "mouse" ],
["drosophila", "anopheles" ],
......@@ -128,7 +146,6 @@ my @go_terms = (["human", "mouse" ],
["danio", "tetraodon" ],
["xenopus", "danio" ]);
my ($from, $to, $o, $e, $n);
# ----------------------------------------
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment