Commits · 0001ae0845e872150d3edbb7d644c083bb9bba30 · ensembl-gh-mirror / ensembl

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Oct 28, 2011
- Missed out a key to type flag change to let UniParc settings be parsed · 0001ae08
  Andy Yates authored 13 years ago
  
  0001ae08
- Add specific GO source (flybasego) for gene direct xrefs from FlyBase. · 76d790ae
  Gautier Koscielny authored 13 years ago
  
  76d790ae
- Add a new specific source for FlyBase GO terms (prior_descr: flybasego) · c24a37dd
  Gautier Koscielny authored 13 years ago
```
This enables to have multiple sources of GO terms. The GO terms extracted
from the GFF file will be processed as 'DIRECT' xrefs linked to genes
```
  c24a37dd
Oct 27, 2011
- Minor corrections to pass the time while waiting for the farm to do its thing. · d2679435
  Kieron Taylor authored 13 years ago
  
  d2679435
- Added the possibility to parse a user parameter to connect to the database · 488780ee
  Arnaud Kerhornou authored 13 years ago
  
  488780ee
Oct 26, 2011
- doc changes · ada79199
  Ian Longden authored 13 years ago
  
  ada79199
- HUGO is now HGNC · 6c6b37f6
  Ian Longden authored 13 years ago
  
  6c6b37f6
- Spelling improvements · 01f62de4
  Kieron Taylor authored 13 years ago
  
  01f62de4
Oct 25, 2011
- first draft of the document to help expalin the running of the xref system · ed3ef884
  Ian Longden authored 13 years ago
  
  ed3ef884
- example files from the xref pipeline · ac2ee655
  Ian Longden authored 13 years ago
  
  ac2ee655
Oct 24, 2011
- now in docs directory · a21e9cf0
  Ian Longden authored 13 years ago
  
  a21e9cf0
- moved to docs directory · d9c6f802
  Ian Longden authored 13 years ago
  
  d9c6f802
- Old docs removed · f905ecc9
  Ian Longden authored 13 years ago
  
  f905ecc9
- Moved to docs directory · f8e86770
  Ian Longden authored 13 years ago
  
  f8e86770
- only add direct xref if the ensembl id is okay · 48f64aca
  Ian Longden authored 13 years ago
  
  48f64aca
- sanity check · 7937b1bb
  Ian Longden authored 13 years ago
  
  7937b1bb
- unlink object xrefs doe dependents wherer the master is not the top priority · e5ad705b
  Ian Longden authored 13 years ago
  
  e5ad705b
Oct 20, 2011
- Added an extra source for gene and transcript names assignments · bdce78b4
  Arnaud Kerhornou authored 13 years ago
  
  bdce78b4
- Added an extra source · d38c7528
  Arnaud Kerhornou authored 13 years ago
  
  d38c7528
Oct 17, 2011
- Remove alt_allele entry if reset_to_parsing_finished is used · 6e733773
  Ian Longden authored 13 years ago
  
  6e733773
- removed fullmode option · c8c2ac05
  Ian Longden authored 13 years ago
  
  c8c2ac05
- typo fix · ede53e95
  Ian Longden authored 13 years ago
  
  ede53e95
- remove partupdate mode · 28dea3b5
  Ian Longden authored 13 years ago
  
  28dea3b5
- added example of using previous release of core to test new xrefs · 66518706
  Monika Komorowska authored 13 years ago
  
  66518706
Oct 13, 2011
- Add filters to remove Beta characters and to remove backslash from the gene name. · 10d2e061
  Gautier Koscielny authored 13 years ago
  
  10d2e061
- Added SchistoDB and jgi_triad sources · 890141f4
  Arnaud Kerhornou authored 13 years ago
  
  890141f4
- Updated SchistoDB source name · ad13acd9
  Arnaud Kerhornou authored 13 years ago
  
  ad13acd9
- bug fix to not obtaining results from prepare call · 567783aa
  Ian Longden authored 13 years ago
  
  567783aa
Oct 12, 2011
- removed partupdate mode, no lonfger feasable · 12028eac
  Ian Longden authored 13 years ago
  
  12028eac
- chnage 64 -> 65 for mouse and human databases · 229c1f30
  Ian Longden authored 13 years ago
  
  229c1f30
- Added extra dbs to the list · 87a144c4
  Arnaud Kerhornou authored 13 years ago
  
  87a144c4
- updated sources for S. mansoni and T. adhaerens · d0c5a124
  Arnaud Kerhornou authored 13 years ago
  
  d0c5a124
- stable_id merge changes · 3930d05a
  Monika Komorowska authored 13 years ago
  
  3930d05a
Oct 11, 2011
- Specific logic for assignment of gene names and description valid for all... · 4706d5e5
  Arnaud Kerhornou authored 13 years ago
```
Specific logic for assignment of gene names and description valid for all Ensembl Genomes species at the exception of a few species (e.g. S. pombe or S. cer)
```
  4706d5e5
- Added EG11 plants and protists sources and species. Also added S. pombe sources and species · 53c82e06
  Arnaud Kerhornou authored 13 years ago
  
  53c82e06
- another name chnage in expr to match file name change · 11b49894
  Ian Longden authored 13 years ago
  
  11b49894
- only get species_id if doing official naming · 9e113ac8
  Ian Longden authored 13 years ago
  
  9e113ac8
- change pass variable name to passive to make it more obvious. Bettere checking of ftp status · 12921ac1
  Ian Longden authored 13 years ago
  
  12921ac1
- file name changed so change expr to match · 6234fe4c
  Ian Longden authored 13 years ago
  
  6234fe4c
Oct 10, 2011
- release file not needed · 3975db29
  Ian Longden authored 13 years ago
  
  3975db29