Commits · 00d26b81511ab59d40b2aa8349e8b09f388dadb4 · ensembl-gh-mirror / ensembl

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Oct 10, 2006
- Corrected doc. · 00d26b81
  Glenn Proctor authored 18 years ago
  
  00d26b81
Oct 04, 2006
- Now looks in gene_archive when calculating highest existing stable ID. · 74c56c98
  Glenn Proctor authored 18 years ago
  
  74c56c98
Oct 02, 2006
- docs on no sql cache for timing sql queries many times · ef162329
  Ian Longden authored 18 years ago
  
  ef162329
- SNPCount entries weren't being deleted before being recalculated. · 8f57c30b
  Glenn Proctor authored 18 years ago
  
  8f57c30b
- Added explanatory comment about primary key in oligo_probe. · 06413129
  Glenn Proctor authored 18 years ago
  
  06413129
- comment out debug info and timings. · c4577712
  Ian Longden authored 18 years ago
  
  c4577712
Sep 28, 2006
- update of tests · e2f7af70
  Felix Kokocinski authored 18 years ago
  
  e2f7af70
- fix in fetch_all_by_ditagID() · 5b3305b1
  Felix Kokocinski authored 18 years ago
  
  5b3305b1
- zip, not gzip... · 9d8eeda4
  Felix Kokocinski authored 18 years ago
  
  9d8eeda4
- inserted patch_40_41_d · 1915e547
  Felix Kokocinski authored 18 years ago
  
  1915e547
- use analysis-id when fetching pairs · 217a209e
  Felix Kokocinski authored 18 years ago
  
  217a209e
Sep 27, 2006
- modified version of dump_genebank script to dump annotated scaffolds for... · 667bfe22
  Martin Hammond authored 18 years ago
```
modified version of dump_genebank script to dump annotated scaffolds for Genbank - as used for v38 db and AgamP3 geneset 3
```
  667bfe22
Sep 26, 2006
- removed BOUNDRY CROSSED error message as this is not needed. The feature is... · 19c0c97b
  Ian Longden authored 18 years ago
```
removed BOUNDRY CROSSED error message as this is not needed. The feature is ignored if it goes past a PER boundry for example but this is supposed to happen
```
  19c0c97b
- code & pod cleanup · 1f63f338
  Felix Kokocinski authored 18 years ago
  
  1f63f338
Sep 25, 2006
- Fix bug in yeast refseqs · 0d1ad963
  Julio Fernandez Banet authored 18 years ago
  
  0d1ad963
- small bug fixes · 7e0a88db
  Ian Longden authored 18 years ago
  
  7e0a88db
- *** empty log message *** · 2257afa9
  Glenn Proctor authored 18 years ago
  
  2257afa9
- Add support for positive and negative enhancer types. · 217897a6
  Glenn Proctor authored 18 years ago
  
  217897a6
- minor pod fix · 00f8784d
  Patrick Meidl authored 18 years ago
  
  00f8784d
- SQL fix for deletion. · 83f7373b
  Glenn Proctor authored 18 years ago
  
  83f7373b
- Start of support for LBNL Enhancer features. · 4ccc2531
  Glenn Proctor authored 18 years ago
  
  4ccc2531
- Allow features that have neither associated factors or ensembl objects (e.g. LBL Enhancers) · bc3afd58
  Glenn Proctor authored 18 years ago
  
  bc3afd58
- Corrected error in Aedes aegypti insert into source was missing the last... · 8d220a27
  Julio Fernandez Banet authored 18 years ago
```
Corrected error in Aedes aegypti insert into source was missing the last column value, and fixed ftp://ftp.ncbi.nih.gov/refseq/release/fungi/ download, I removed the files bigger than fungi12.* as they no longer exist
```
  8d220a27
- Reverted to v1.11 · 7054b07d
  Glenn Proctor authored 18 years ago
  
  7054b07d
Sep 22, 2006
- Make fetch_all_by_hit_name_unversioned consider the . in the name. · 01ed883b
  Glenn Proctor authored 18 years ago
  
  01ed883b
- Check adaptor is there before using it. · a56041e0
  Glenn Proctor authored 18 years ago
  
  a56041e0
- get_all_synonyms now lazy-loads synonyms if required. · 330c5b5a
  Glenn Proctor authored 18 years ago
  
  330c5b5a
- Added fetch_all_synonyms to allow lazy-loading of synonyms in DBEntry. · 785213d3
  Glenn Proctor authored 18 years ago
  
  785213d3
Sep 21, 2006
- ucfirst species names in info_text · 89289606
  Glenn Proctor authored 18 years ago
  
  89289606
- Changed display label of RGD to RGD Symbol. · 01aa0530
  Glenn Proctor authored 18 years ago
  
  01aa0530
- Corrected perldoc (example wasn't using a listref) · 24f1d52a
  Glenn Proctor authored 18 years ago
  
  24f1d52a
Sep 20, 2006
- reverted · 1ab34ae0
  Felix Kokocinski authored 18 years ago
  
  1ab34ae0
- bugtweak · 201cea30
  Felix Kokocinski authored 18 years ago
  
  201cea30
Sep 19, 2006
- clarification to documentation for fetch_all() · f80791f1
  Patrick Meidl authored 18 years ago
  
  f80791f1
- Delete old features before recalculating. · 62792d25
  Glenn Proctor authored 18 years ago
  
  62792d25
Sep 18, 2006
- Changed method to ENSEMBL_ORTHOLOGUES · dbfb6817
  Glenn Proctor authored 18 years ago
  
  dbfb6817
Sep 15, 2006
- fix to stop descriptions for some hgnc identifiers not being copied · 381da0d3
  Ian Longden authored 18 years ago
  
  381da0d3
- modified modules using StrainSlice to handle new database schema · 35c77d47
  Daniel Rios authored 18 years ago
  
  35c77d47
- needs feature_Slice->project to work · a4b8b7ed
  Felix Kokocinski authored 18 years ago
  
  a4b8b7ed
- Convert cigar line read from exonerate to format 439M after reading. · 97be74eb
  Glenn Proctor authored 18 years ago
  
  97be74eb