Commits · 0a388edf26905eded67e6e17fa5dd949bb22d81c · ensembl-gh-mirror / ensembl

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Oct 12, 2006
- Tests for new UnconventionalTranscriptAssociationAdaptor object. · 0a388edf
  Glenn Proctor authored 18 years ago
  
  0a388edf
- Tests for new UnconventionalTranscriptAssociation object. · 34d5fdb9
  Glenn Proctor authored 18 years ago
  
  34d5fdb9
- Added UnconventionalTranscriptAssociation to list of adaptors. · 7ead34ce
  Glenn Proctor authored 18 years ago
  
  7ead34ce
- Added functionality to add and get unconventional transcripts associated with this gene. · aaa5c0d5
  Glenn Proctor authored 18 years ago
  
  aaa5c0d5
- Added unconventional transcripts to store() and remove(). · cfff4504
  Glenn Proctor authored 18 years ago
  
  cfff4504
- Adaptor for non-standard gene/transcript associations. · 34b05ddf
  Glenn Proctor authored 18 years ago
  
  34b05ddf
- New module to represent non-standard associations between genes and transcripts (antisense, etc). · 4be99e5c
  Glenn Proctor authored 18 years ago
  
  4be99e5c
Oct 10, 2006
- Changed High Risk status to At Risk. All the Affy* modules will go away soon anyway. · f6d3e5e1
  Glenn Proctor authored 18 years ago
  
  f6d3e5e1
- Changed status of fetch_all_by_logic_name from Experimental (!?) to Stable. · 6a7df6fe
  Glenn Proctor authored 18 years ago
  
  6a7df6fe
- Corrected doc. · 00d26b81
  Glenn Proctor authored 18 years ago
  
  00d26b81
Oct 02, 2006
- docs on no sql cache for timing sql queries many times · ef162329
  Ian Longden authored 18 years ago
  
  ef162329
- comment out debug info and timings. · c4577712
  Ian Longden authored 18 years ago
  
  c4577712
Sep 28, 2006
- update of tests · e2f7af70
  Felix Kokocinski authored 18 years ago
  
  e2f7af70
- fix in fetch_all_by_ditagID() · 5b3305b1
  Felix Kokocinski authored 18 years ago
  
  5b3305b1
- zip, not gzip... · 9d8eeda4
  Felix Kokocinski authored 18 years ago
  
  9d8eeda4
- inserted patch_40_41_d · 1915e547
  Felix Kokocinski authored 18 years ago
  
  1915e547
- use analysis-id when fetching pairs · 217a209e
  Felix Kokocinski authored 18 years ago
  
  217a209e
Sep 26, 2006
- removed BOUNDRY CROSSED error message as this is not needed. The feature is... · 19c0c97b
  Ian Longden authored 18 years ago
```
removed BOUNDRY CROSSED error message as this is not needed. The feature is ignored if it goes past a PER boundry for example but this is supposed to happen
```
  19c0c97b
- code & pod cleanup · 1f63f338
  Felix Kokocinski authored 18 years ago
  
  1f63f338
Sep 25, 2006
- minor pod fix · 00f8784d
  Patrick Meidl authored 18 years ago
  
  00f8784d
Sep 22, 2006
- Make fetch_all_by_hit_name_unversioned consider the . in the name. · 01ed883b
  Glenn Proctor authored 18 years ago
  
  01ed883b
- Check adaptor is there before using it. · a56041e0
  Glenn Proctor authored 18 years ago
  
  a56041e0
- get_all_synonyms now lazy-loads synonyms if required. · 330c5b5a
  Glenn Proctor authored 18 years ago
  
  330c5b5a
- Added fetch_all_synonyms to allow lazy-loading of synonyms in DBEntry. · 785213d3
  Glenn Proctor authored 18 years ago
  
  785213d3
Sep 21, 2006
- Corrected perldoc (example wasn't using a listref) · 24f1d52a
  Glenn Proctor authored 18 years ago
  
  24f1d52a
Sep 20, 2006
- reverted · 1ab34ae0
  Felix Kokocinski authored 18 years ago
  
  1ab34ae0
- bugtweak · 201cea30
  Felix Kokocinski authored 18 years ago
  
  201cea30
Sep 19, 2006
- clarification to documentation for fetch_all() · f80791f1
  Patrick Meidl authored 18 years ago
  
  f80791f1
Sep 15, 2006
- modified modules using StrainSlice to handle new database schema · 35c77d47
  Daniel Rios authored 18 years ago
  
  35c77d47
Sep 13, 2006
- Improved Perldoc. · 566ce6a3
  Glenn Proctor authored 18 years ago
  
  566ce6a3
- Added fetch_all_by_hit_name_unversioned. · 25ce5eb3
  Glenn Proctor authored 18 years ago
  
  25ce5eb3
- Fixed Perldoc · d244ea8a
  Glenn Proctor authored 18 years ago
  
  d244ea8a
Sep 01, 2006
- Added xref_priority (can't just call it priority as this is already used in external_db. · 779ead33
  Glenn Proctor authored 18 years ago
  
  779ead33
- Added test for xref priority. · 94fa23b2
  Glenn Proctor authored 18 years ago
  
  94fa23b2
- Added xref.priority · 4ebe2e9f
  Glenn Proctor authored 18 years ago
  
  4ebe2e9f
Aug 31, 2006
- minor change · a66dc6b2
  Patrick Meidl authored 18 years ago
  
  a66dc6b2
- latest changes · e77208c8
  Patrick Meidl authored 18 years ago
  
  e77208c8
- first (draft) version of new modules for ID mapping · f098d487
  Patrick Meidl authored 18 years ago
  
  f098d487
- Updated version to 41. · 8823cde9
  Glenn Proctor authored 18 years ago
  
  8823cde9
Aug 29, 2006
- Added analysis_description.displayable · 06d48630
  Glenn Proctor authored 18 years ago
  
  06d48630