Commits · 0b85d87713c8a7b7b83afa1ea59bfcf3575a7081 · ensembl-gh-mirror / ensembl

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May 29, 2012
- Tests altered to include threaded insertions to test for "transactional" behaviour · 0b85d877
  Kieron Taylor authored 13 years ago
  
  0b85d877
- Xref table overhaul. Uniqueness enforced, coupled with insert-then-query... · 6d4dbc50
  Kieron Taylor authored 13 years ago
  6d4dbc50
May 28, 2012
- ENSCORESW-166 . Switched to bringing back the DB release and only asking to... · 320987e1
  Andy Yates authored 13 years ago
  320987e1
- updated comments · e0f566cc
  Monika Komorowska authored 13 years ago
  
  e0f566cc
- updated instructions for creating the ontology database · 36315dff
  Monika Komorowska authored 13 years ago
  
  36315dff
- updated url for SO.obo file · f0be056f
  Monika Komorowska authored 13 years ago
  
  f0be056f
- updated instructions for creating the ontology database · 99fedd97
  Monika Komorowska authored 13 years ago
  
  99fedd97
May 24, 2012
- Bugfix submitted by Kusalananda. Fixes the error message as before it was mis-leading · bfff1e15
  Andy Yates authored 13 years ago
  
  bfff1e15
- Only run --fixlast logic if the schema had a version · 0f2817e9
  Andy Yates authored 13 years ago
  
  0f2817e9
- Missing option added to summary section of help · b80143ab
  Andy Yates authored 13 years ago
  
  b80143ab
- Fixes for --fixlast making sure we do not attempt to fix a schema too far in the past · f3166fb8
  Andy Yates authored 13 years ago
  
  f3166fb8
- Updated schema to match release 67, and replaced null test data with valid 'zeroes' · b3ed6b6f
  Kieron Taylor authored 13 years ago
  
  b3ed6b6f
- Tidied differences in documentation and script options: fixlatest -> fixlast · ec10614e
  Kieron Taylor authored 13 years ago
  
  ec10614e
May 23, 2012
- Adding a registry version to CliHelper · c2be78de
  Andy Yates authored 13 years ago
  
  c2be78de
- Default the pattern to all core databases · c4132fd9
  Andy Yates authored 13 years ago
  
  c4132fd9
May 22, 2012
- ENSCORESW-159 test case. Adding a -ve strand example based on the 66 human release · 4b6598cd
  Andy Yates authored 13 years ago
  
  4b6598cd
- Adding the no_alias check to the get_species_and_object_type() method to avoid... · b51e4de7
  Andy Yates authored 13 years ago
  b51e4de7
- Adding a --fixlast option which does the last release & current release patches only · d50a125d
  Andy Yates authored 13 years ago
  
  d50a125d
- schema version update · f5047b88
  Monika Komorowska authored 13 years ago
  
  f5047b88
- schema version patch · de90826d
  Monika Komorowska authored 13 years ago
  
  de90826d
- software version update · ee8e55f6
  Monika Komorowska authored 13 years ago
  
  ee8e55f6
- load_registry_from_db - load the stable ids lookup database if found;... · 72c963af
  Monika Komorowska authored 13 years ago
  72c963af
- This script creates and populates the ensembl_stable_ids_xx db · 837d452a
  Monika Komorowska authored 13 years ago
  
  837d452a
- Source file for ensembl_stable_ids_xx database · 612bac37
  Monika Komorowska authored 13 years ago
  
  612bac37
- ENSCORESW-159 . Adding description of what we based the test on · 23442a34
  Andy Yates authored 13 years ago
  
  23442a34
- ENSCORESW-159 test case. Only dealing with +ve strand test ATMO · bbb1e4ae
  Andy Yates authored 13 years ago
  
  bbb1e4ae
- ENSCORESW-159 . Fix for issue found with coding_region_start which was using... · 4ce737c0
  Andy Yates authored 13 years ago
  4ce737c0
- ENSCORESW-156 . Fixing the memory requirements · 3ace762f
  Andy Yates authored 13 years ago
  
  3ace762f
May 21, 2012
- Slight re-working of method to avoid insert id issues and to still take in attributes · 18a4df8c
  Andy Yates authored 13 years ago
  
  18a4df8c
- Adding support for manual table but also added a MySQL mode which just ignores any parameter · bef21083
  Andy Yates authored 13 years ago
  
  bef21083
May 17, 2012
- Using spaces instead of tabs for indentation. · 30eb8089
  Amonida Zadissa authored 13 years ago
  
  30eb8089
- Bugfix for dump_fasta(). This method should be replaced by FASTASerialiser very soon · 248e08b0
  Andy Yates authored 13 years ago
  
  248e08b0
- check if hash key exists before dereferencing · fe934576
  Monika Komorowska authored 13 years ago
  
  fe934576
May 16, 2012
- ENSCORESW-125 . Readme not working due to missing function import · 7b4789ed
  Andy Yates authored 13 years ago
  
  7b4789ed
- Forgot the readme code · 2795942d
  Andy Yates authored 13 years ago
  
  2795942d
- ENSCORESW-125 . More memory requirements · cc9800fb
  Andy Yates authored 13 years ago
  
  cc9800fb
- ENSCORESW-125 . No DB types needed · c7da6560
  Andy Yates authored 13 years ago
  
  c7da6560
- ENSCORESW-125 . First commit of flatfile dumper. Being committed as a way of avoiding loosing code · fcd93104
  Andy Yates authored 13 years ago
  
  fcd93104
- Reformatting the SOURCES box. · 61a732c5
  Amonida Zadissa authored 13 years ago
  
  61a732c5
- bringing the example into line with the new 'get_adaptor' method, rather than... · 3ec9be10
  Dan Bolser authored 13 years ago
  3ec9be10