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- Nov 05, 2012
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Kieron Taylor authored
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Andy Yates authored
use Test::More rather than old Test library. Avoids breaking tests when we change the numbers of tests run
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Magali Ruffier authored
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Dan Staines authored
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Dan Staines authored
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Dan Staines authored
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Dan Staines authored
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Dan Staines authored
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Dan Staines authored
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Dan Staines authored
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Andy Yates authored
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Dan Staines authored
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Andy Yates authored
New patch which brings back the data_file's missing auto_increment declaration from patched databases. This does affect new databases created from the table.sql file.
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- Nov 02, 2012
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Andy Yates authored
[ENSCORESW-302]. TranslationAdaptor did not deal with multispecies databases properly when querying for IDs.
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Kieron Taylor authored
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Kieron Taylor authored
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Kieron Taylor authored
Added missing parameter to allow secondary database password. Otherwise it defaults to none and fails.
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Magali Ruffier authored
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Magali Ruffier authored
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- Nov 01, 2012
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Dan Staines authored
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Andy Yates authored
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James Allen authored
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James Allen authored
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Andy Yates authored
[ENSCORESW-301]. Adding INSERT IGNORE to a lot of statements as EFO can repeat terms and subsets from other ontologies.
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James Allen authored
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Magali Ruffier authored
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Magali Ruffier authored
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Andy Yates authored
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Andy Yates authored
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Andy Yates authored
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Andy Yates authored
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Magali Ruffier authored
when projecting a symbol onto a gene, use the same symbol for all attached transcripts, with version number in format -201 for all species now, not just pig
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Magali Ruffier authored
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Magali Ruffier authored
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Magali Ruffier authored
Uniprot_genename has been added to RFAM and miRBase as a trusted source for gene name assignement
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Magali Ruffier authored
used in OfficialNaming mapper for merged species Uniprot_genename is now a valid source for gene display assignment, along with RFAM and miRBase
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Magali Ruffier authored
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- Oct 31, 2012
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Andy Yates authored
Names can exceed 255 characters. Switched to TEXT which gives us 64K strings and added a 50 char prefix index to the table
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Andy Yates authored
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- Oct 30, 2012
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Kieron Taylor authored
Added GOA webservice call, timeout response, and subsequent usage of the blacklist to the projections.
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