Commits · 1068d1e5a40271ef8c25774355f334d5a5414ec9 · ensembl-gh-mirror / ensembl

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Apr 14, 2008
- Added Vega dumping as well. · 1068d1e5
  Glenn Proctor authored 16 years ago
  
  1068d1e5
Apr 11, 2008
- Tables with regulatory data was dropped with 'patch_48_49_c.sql', this · f21e9d56
  Andreas Kusalananda Kähäri authored 16 years ago
```
has consequences for the foreign keys-file.
```
  f21e9d56
- Added DESCRIPTION. · 175fc2f0
  Andreas Kusalananda Kähäri authored 16 years ago
  
  175fc2f0
Apr 10, 2008
- vega tweak · fe16a928
  Steve Trevanion authored 16 years ago
  
  fe16a928
Apr 08, 2008
- Add NAME and SYNOPSIS section. · 019cdc78
  Andreas Kusalananda Kähäri authored 16 years ago
  
  019cdc78
- Make sure everything that the standard Exon object contains may be found · adb45b3c
  Andreas Kusalananda Kähäri authored 16 years ago
```
in a feature collection exon as well.
```
  adb45b3c
Apr 04, 2008
- Comment out testing shortcut that exits the scripts. · 86ce0fbc
  Andreas Kusalananda Kähäri authored 16 years ago
  
  86ce0fbc
- Avoid division by zero in generate_mapping_stats(). · 0858b9cf
  Andreas Kusalananda Kähäri authored 16 years ago
  
  0858b9cf
- changed param dumppath to basedir · 23c5faec
  Patrick Meidl authored 16 years ago
  
  23c5faec
- first set of initial checks; changed param dumppath to basedir · 55502b5e
  Patrick Meidl authored 16 years ago
  
  55502b5e
- changed LINUX86 to X86_64 lsf host type · ab711d25
  Patrick Meidl authored 16 years ago
  
  ab711d25
- minor fix · b5017e3a
  Patrick Meidl authored 16 years ago
  
  b5017e3a
- added drop table statements · 2b8552ff
  Patrick Meidl authored 16 years ago
  
  2b8552ff
- debug · 67d1afec
  Patrick Meidl authored 16 years ago
  
  67d1afec
- now can compare all entity types; much more in-depth comparison · 795451a8
  Patrick Meidl authored 16 years ago
  
  795451a8
- bug fix · 00a12692
  Patrick Meidl authored 16 years ago
  
  00a12692
- change to reflect Cache implementation changes · f0d7753e
  Patrick Meidl authored 16 years ago
  
  f0d7753e
- script to compare scores from two stable ID mapping runs · 0f5f78d2
  Patrick Meidl authored 16 years ago
  
  0f5f78d2
- script to run synteny rescoring in parallel on the farm · ec74ab6a
  Patrick Meidl authored 16 years ago
  
  ec74ab6a
- added default value support to user_proceed() · 4c291ef6
  Patrick Meidl authored 16 years ago
  
  4c291ef6
- debugging · d2ce116f
  Patrick Meidl authored 16 years ago
  
  d2ce116f
- proper length attribute · cde4ed87
  Patrick Meidl authored 16 years ago
  
  cde4ed87
- removed display_name attribute · b8ab9499
  Patrick Meidl authored 16 years ago
  
  b8ab9499
- bug fixes · 413d0d81
  Patrick Meidl authored 16 years ago
  
  413d0d81
- now isa Serialisable; added code to parallelise synteny rescoring · 94086e7b
  Patrick Meidl authored 16 years ago
  
  94086e7b
- more flexible handling of cache file name · a7f2db25
  Patrick Meidl authored 16 years ago
  
  a7f2db25
- added flush(), sub_matrix(), size() and log() methods · d567cb6e
  Patrick Meidl authored 16 years ago
  
  d567cb6e
- minor logging improvement · eb2253df
  Patrick Meidl authored 16 years ago
  
  eb2253df
- debug · c3c83292
  Patrick Meidl authored 16 years ago
  
  c3c83292
- bug fixes. run synteny assisted mappping in parallel · e2645d4f
  Patrick Meidl authored 16 years ago
  
  e2645d4f
- don't do display name disambiguation · d3a8445b
  Patrick Meidl authored 16 years ago
  
  d3a8445b
- mainly debug additions · b2675ee5
  Patrick Meidl authored 16 years ago
  
  b2675ee5
- minor improvements to to_string*() methods · d8083948
  Patrick Meidl authored 16 years ago
  
  d8083948
- changed internal implementation to store all cache types in one file (fixes... · b2e28a16
  Patrick Meidl authored 16 years ago
```
changed internal implementation to store all cache types in one file (fixes shared references issue with Storable and largely reduces memory consumption)
```
  b2e28a16
- added no_check_empty option to upload_file_into_table() · 90e38e4f
  Patrick Meidl authored 16 years ago
  
  90e38e4f
Apr 03, 2008
- Diable the 'index' and 'feature' binning methods. · d37670b6
  Andreas Kusalananda Kähäri authored 16 years ago
  
  d37670b6
- changes to vega gene types · 196ce149
  Steve Trevanion authored 16 years ago
  
  196ce149
- tweaks for new human Vega · 694b8b22
  Steve Trevanion authored 16 years ago
  
  694b8b22
Mar 26, 2008
- removed on branch-vega-48-dev · d038f9d4
  Steve Trevanion authored 17 years ago
  
  d038f9d4
- merge from vega-48-dev · f7ccac98
  Steve Trevanion authored 17 years ago
  
  f7ccac98