Commits · 11170b50ce5254fb505c7ae786e31c9a9e234bf4 · ensembl-gh-mirror / ensembl

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Dec 20, 2011
- Corrected description of canonical_translation_id in the transcript table. · 11170b50
  Monika Komorowska authored 13 years ago
  
  11170b50
Dec 19, 2011
- delete unnecessary comma · 58c25848
  Monika Komorowska authored 13 years ago
  
  58c25848
- delete unnecessary comma · c148766d
  Monika Komorowska authored 13 years ago
  
  c148766d
Dec 14, 2011
- default dir is dumps when version isn't given · 6286788c
  Andy Yates authored 13 years ago
  
  6286788c
- Relaxing rules WRT not requiring -version when using -defaults · 49395a3d
  Andy Yates authored 13 years ago
  
  49395a3d
- change to usage section · e7f0eaa5
  Monika Komorowska authored 13 years ago
  
  e7f0eaa5
- Adding a check in here to highlight when a regular expression failed to match... · 28ba6e07
  Andy Yates authored 13 years ago
```
Adding a check in here to highlight when a regular expression failed to match meaning we've found a corrupted schema patch identifier which should be removed
```
  28ba6e07
- Bit more info in the docs · cf270c2e
  Andy Yates authored 13 years ago
  
  cf270c2e
- Letting the config file specify just SQL dumps · 1500913c
  Andy Yates authored 13 years ago
  
  1500913c
- Documentation updates · 37fbcb34
  Andy Yates authored 13 years ago
  
  37fbcb34
- Commit of the core DB populator script · e72a3465
  Andy Yates authored 13 years ago
  
  e72a3465
- fix usage of dry_run parameter · ad051607
  Monika Komorowska authored 13 years ago
  
  ad051607
Dec 13, 2011
- Don't pass null into a column that is not allowed to have null as value, · bc44e9db
  epaule authored 13 years ago
```
will use 0 instead
```
  bc44e9db
- don't use TYPE= that has been deprecated years ago and doesn't work anymore · 73e17e45
  epaule authored 13 years ago
  
  73e17e45
- Added new species, gaeumannomyces_graminis · adfad7be
  Arnaud Kerhornou authored 13 years ago
  
  adfad7be
- Documentation update · 4dfd9ecf
  Andy Yates authored 13 years ago
  
  4dfd9ecf
- use the default column value instead of an empty string as version · 6b4df2c3
  epaule authored 13 years ago
  
  6b4df2c3
- the BaseParser expects error_codes and no fatal errors to work around checking... · 537bf49e
  epaule authored 13 years ago
```
the BaseParser expects error_codes and no fatal errors to work around checking for existence of xrefs,
so I turned them off again
```
  537bf49e
Dec 12, 2011
- unique genes method (for assembly patches), interactive does have an argument,... · 0ce0ebf5
  Steve Trevanion authored 13 years ago
```
unique genes method (for assembly patches), interactive does have an argument, other binaries default to 1 if nothing specified
```
  0ce0ebf5
- * fixed the UniProt version parsing · 56da698e
  epaule authored 13 years ago
```
* reenabled text SQL error messages, as error codes make it impossible to find out which error happened in which statement
```
  56da698e
- added section counting the size and mapping percentage of continuous runs of projections · a6a7816b
  Monika Komorowska authored 13 years ago
  
  a6a7816b
Dec 09, 2011
- Typo in POD of get_Gene method. · 67a07432
  Kieron Taylor authored 13 years ago
  
  67a07432
Dec 08, 2011
- updated patch identifiers · 35efd363
  Monika Komorowska authored 13 years ago
  
  35efd363
- Reorder an index in unmapped_object · 021d2e8f
  Monika Komorowska authored 13 years ago
  
  021d2e8f
- external_db_id definition change · e6a65b25
  Monika Komorowska authored 13 years ago
  
  e6a65b25
- schema version update · 64776949
  Monika Komorowska authored 13 years ago
  
  64776949
- schema version update · 2195ced6
  Monika Komorowska authored 13 years ago
  
  2195ced6
- updated API version · 5cd0180f
  Monika Komorowska authored 13 years ago
  
  5cd0180f
- updated documentation for method get_all_DBEntries · 7b29ce83
  Monika Komorowska authored 13 years ago
  
  7b29ce83
- that readme is actually for the unmapped_reason table and *not* external_db · e61f0169
  epaule authored 13 years ago
  
  e61f0169
- Updated the help wrt the production database commandline arguments · eb827e26
  Arnaud Kerhornou authored 13 years ago
  
  eb827e26
- Added commandline arguments for connecting ensembl_production db · 827fd6c2
  Arnaud Kerhornou authored 13 years ago
  
  827fd6c2
- Fixed bug with the character ` in the input file · af49c477
  Laurent Gil authored 13 years ago
  
  af49c477
- Added a missung use statement for DBAdaptor.pm · 27304384
  Arnaud Kerhornou authored 13 years ago
  
  27304384
- added production database paramertes to make it work for Ensembl Genomes · 3c1bf83d
  Uma Maheswari authored 13 years ago
  
  3c1bf83d
Dec 07, 2011
- Checksums should be the other way around. It's checksum then file not file then checksum · e3233965
  Andy Yates authored 13 years ago
  
  e3233965
- Up-comming patches not live yet · e2e40b26
  Andy Yates authored 13 years ago
  
  e2e40b26
- Bugfixing the reactivaition of aliases and making sure we only do it if we need to · becad6a4
  Andy Yates authored 13 years ago
  
  becad6a4
- Alternative script which does processing based upon taxonomy databases · 134468c2
  Andy Yates authored 13 years ago
  
  134468c2
- fixed gene synonym xml bug · ef905951
  Nick Langridge authored 13 years ago
  
  ef905951