Commits · 11b49894b3b19eca024f711538e335f3d25c6fc7 · ensembl-gh-mirror / ensembl

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Oct 11, 2011
- another name chnage in expr to match file name change · 11b49894
  Ian Longden authored 13 years ago
  
  11b49894
- only get species_id if doing official naming · 9e113ac8
  Ian Longden authored 13 years ago
  
  9e113ac8
- change pass variable name to passive to make it more obvious. Bettere checking of ftp status · 12921ac1
  Ian Longden authored 13 years ago
  
  12921ac1
- file name changed so change expr to match · 6234fe4c
  Ian Longden authored 13 years ago
  
  6234fe4c
- Dump of the production database before genebuild handover for release 65. · 8c988249
  Andreas Kusalananda Kähäri authored 13 years ago
  
  8c988249
- LSF dependencies removed. Correction of sql statement to get the list of cores. · 105fc708
  Gautier Koscielny authored 13 years ago
  
  105fc708
Oct 10, 2011
- Dates changed in the copyright notice. · 2a4087a9
  Gautier Koscielny authored 13 years ago
  
  2a4087a9
- Date and version changed. · 8dd68f99
  Gautier Koscielny authored 13 years ago
  
  8dd68f99
- Bash script to compute the splicing events on a core database and to write · ed0807b5
  Gautier Koscielny authored 13 years ago
```
the results in the same core database. Use LSF to run the jobs on a farm.
```
  ed0807b5
- Documentation to compute the alternative splicing events in one go. · d3e198bd
  Gautier Koscielny authored 13 years ago
  
  d3e198bd
- release file not needed · 3975db29
  Ian Longden authored 13 years ago
  
  3975db29
- Die with message if mysqldump fails. · a5b30191
  Andreas Kusalananda Kähäri authored 13 years ago
  
  a5b30191
- Formatting and dumping of existing analysis_description table using mysqldump. · 3b232124
  Andreas Kusalananda Kähäri authored 13 years ago
  
  3b232124
- Formatting, mostly. · a99d1a4b
  Andreas Kusalananda Kähäri authored 13 years ago
  
  a99d1a4b
- Util library Makefile.am · 950118f4
  Gautier Koscielny authored 13 years ago
  
  950118f4
- Alternative Splicing GFF parser library Makefile.am · 1c336a52
  Gautier Koscielny authored 13 years ago
  
  1c336a52
- Alternative splicing library Makefile.am · d0b73bd8
  Gautier Koscielny authored 13 years ago
  
  d0b73bd8
- CPPFLAGS added (extra flags for includes) · 70cdc8dd
  Gautier Koscielny authored 13 years ago
  
  70cdc8dd
- Updated for the 0.5.4 version of the toolkit · 021eb7cb
  Gautier Koscielny authored 13 years ago
  
  021eb7cb
- Extra documentation on the installation process for the Ensembl team. · c9d0ef6e
  Gautier Koscielny authored 13 years ago
  
  c9d0ef6e
Oct 07, 2011
- Readablility. · 7bd9ac7c
  Andreas Kusalananda Kähäri authored 13 years ago
  
  7bd9ac7c
- Be specific about what table 'created_date' and 'modified_date' are in. · 629e61a3
  Andreas Kusalananda Kähäri authored 13 years ago
  
  629e61a3
- added release info for new refseq sources · 03ae239c
  Ian Longden authored 13 years ago
  
  03ae239c
- changed refseq_dna to refseq_mRNA and Refseq_ncRNA · cab403b7
  Ian Longden authored 13 years ago
  
  cab403b7
Oct 06, 2011
- Drop external_db_id from call to get_synonyms() as it is not · 0216abb2
  Andreas Kusalananda Kähäri authored 13 years ago
```
used. Spotted by Magali.
```
  0216abb2
- In map_stable_ids(): Only add mapping events if the stable ID has · 62b0b209
  Andreas Kusalananda Kähäri authored 13 years ago
```
changed, if the version has changed, or if the score is less than 1.
```
  62b0b209
- added another ignore sql statement for Uniprot/SPTREMBL priority_description protein_evidence_gt_3 · 94caa882
  Monika Komorowska authored 13 years ago
  
  94caa882
- update ignore hash · 1e5a3806
  Monika Komorowska authored 13 years ago
  
  1e5a3806
- update ignore sql statement for EntrezGene · d51a835b
  Monika Komorowska authored 13 years ago
  
  d51a835b
- Fixed ignore sql that was broken for ignoring entrezgene names if they came via refseq_predicted · d41fbed3
  Ian Longden authored 13 years ago
  
  d41fbed3
- updated ignore hash · 00470a19
  Monika Komorowska authored 13 years ago
  
  00470a19
- added another ignore sql statement for Uniprot/SPTREMBL priority_description protein_evidence_gt_3 · f40f8e7e
  Monika Komorowska authored 13 years ago
  
  f40f8e7e
- added another ignore sql statement for Uniprot/SPTREMBL priority_description protein_evidence_gt_3 · 1957b5b5
  Monika Komorowska authored 13 years ago
  
  1957b5b5
- parsing protein evidence code · e479aa15
  Monika Komorowska authored 13 years ago
  
  e479aa15
- Added new source for Uniprot/SPTREMBL with protein evidence codes > 3 · 5831cab8
  Monika Komorowska authored 13 years ago
  
  5831cab8
- added distinct to select_sth sql - we can have multiple rows with the same... · 4aa2880c
  Monika Komorowska authored 13 years ago
```
added distinct to select_sth sql - we can have multiple rows with the same child parent and relation_id since adding INTERSECTION tags
```
  4aa2880c
Oct 05, 2011
- Backing out stable_id merging changes until databases are patched · 4a1c8b7b
  Monika Komorowska authored 13 years ago
  
  4a1c8b7b
- Backing out stable_id merging changes until databases are patched · 623aa349
  Monika Komorowska authored 13 years ago
  
  623aa349
- Backing out stable_id merging changes until databases are patched · 8cbcec25
  Monika Komorowska authored 13 years ago
  
  8cbcec25
- Remove options 'do_project_to_common_cs' and 'do_similarity_scoring'. · 078de54c
  Andreas Kusalananda Kähäri authored 13 years ago
  
  078de54c