Commits · 135b14ea8d7e4245cbce5669dfb26c37ff3074ef · ensembl-gh-mirror / ensembl

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Mar 13, 2003
- *** empty log message *** · 135b14ea
  Emmanuel Mongin authored 22 years ago
  
  135b14ea
- added remove() and update() · ba34bb76
  Simon Potter authored 22 years ago
  
  ba34bb76
- added support for optional dumping of estgene/vega genes · fb740ac7
  Graham McVicker authored 22 years ago
  
  fb740ac7
- Qtl and QtlFeature Adaptor get functions added · 90df228e
  Arne Stabenau authored 22 years ago
  
  90df228e
- flush exons didnt flush the cdna_coding_start/end cache · b658446a
  Arne Stabenau authored 22 years ago
  
  b658446a
- converter from GenericHSP to BaseAlignFeature's submodules, for blast report · 048b9f36
  juguang authored 22 years ago
```
GenericHPS::algorithm tells what program of blastall is used, and in response of this, the code try to find the specific alignment feature in EnsEMBL.
```
  048b9f36
Mar 12, 2003
- Slice can retrieve qtl features · 1ec434ad
  Arne Stabenau authored 22 years ago
  
  1ec434ad
- API for qtls · 4bf96eea
  Arne Stabenau authored 22 years ago
  
  4bf96eea
- New test and test data for qtls · f0c176db
  Arne Stabenau authored 22 years ago
  
  f0c176db
- fix broken method fetch_by_translation_id · 469fc39d
  Graham McVicker authored 22 years ago
  
  469fc39d
- *** empty log message *** · 4a2fa827
  Emmanuel Mongin authored 22 years ago
  
  4a2fa827
Mar 11, 2003
- *** empty log message *** · 10601a94
  Emmanuel Mongin authored 22 years ago
  
  10601a94
Mar 10, 2003
- removed crufty methods to_FTHelper, intron_start, intron_position · 6bb51407
  Graham McVicker authored 22 years ago
  
  6bb51407
- Fixed so that protein hits without corresponding InterPro hits still come out · 0786f0a9
  Web Admin authored 22 years ago
  
  0786f0a9
Mar 07, 2003
- force chromosome names to be cast as strings so mysql doesn't screw up · fb86bb41
  Graham McVicker authored 22 years ago
```
removed unnecessary evals
```
  fb86bb41
- removed use of Intron module · e993c76e
  Graham McVicker authored 22 years ago
  
  e993c76e
- removed never used, and currently broken Intron module · 2561ae12
  Graham McVicker authored 22 years ago
  
  2561ae12
Mar 06, 2003
- tweaks to make dnadb work better · 8637a77c
  Graham McVicker authored 22 years ago
  
  8637a77c
- *** empty log message *** · 936d9e78
  Tanya Gray authored 22 years ago
  
  936d9e78
- get_binvalues modified - set default value for biggest_value and smallest_value · 82e7110d
  Tanya Gray authored 22 years ago
  
  82e7110d
- Converter system. Converting objects between EnsEMBL and other projects, mainly Bioperl. · 374b7a21
  juguang authored 22 years ago
  
  374b7a21
Mar 05, 2003
- coding_start/end => coding_region_start/end · e6f80908
  Graham McVicker authored 22 years ago
  
  e6f80908
- added coding_start/end disclaimer · 37fc092f
  Graham McVicker authored 22 years ago
  
  37fc092f
- · eea79a8d
  Laura Clarke authored 22 years ago
```
added a little more info to the no default assembly error message
```
  eea79a8d
- · d6e1d9bc
  Laura Clarke authored 22 years ago
```
changed display_label method
```
  d6e1d9bc
Mar 04, 2003
- *** empty log message *** · e1314203
  Emmanuel Mongin authored 22 years ago
  
  e1314203
- better PODs · 4a0ee8e1
  Graham McVicker authored 22 years ago
  
  4a0ee8e1
- added method get_base_count · 0b1ec66f
  Graham McVicker authored 22 years ago
  
  0b1ec66f
- added test for get_base_count · cf507e1c
  Graham McVicker authored 22 years ago
  
  cf507e1c
- script to munge columns in dumps of tables where column order differs · 5fbcf7f9
  Simon Potter authored 22 years ago
  
  5fbcf7f9
Mar 03, 2003
- added method get_base_count · c42a41ea
  Graham McVicker authored 22 years ago
  
  c42a41ea
- added test for Slice::get_base_count · 7716a16a
  Graham McVicker authored 22 years ago
  
  7716a16a
Mar 02, 2003
- Utility scripts to get diff nuc acid freq · 9579dd89
  Emmanuel Mongin authored 22 years ago
  
  9579dd89
- update on the genebank submission dumping script · 3917fcf7
  Emmanuel Mongin authored 22 years ago
  
  3917fcf7
Feb 28, 2003
- fixed mapfrags · edd5b698
  Web Admin authored 22 years ago
  
  edd5b698
- made output syntax stricter, artemis happy now · b9e67536
  Graham McVicker authored 22 years ago
  
  b9e67536
- avoid a perl warning · 995e27be
  Graham McVicker authored 22 years ago
  
  995e27be
- typo · 487ab603
  Graham McVicker authored 22 years ago
  
  487ab603
- minor changes to keep BioJava parser happy · 1090cdf8
  Graham McVicker authored 22 years ago
  
  1090cdf8
Feb 27, 2003
- removed hacky embl dumping modules · 68602efb
  Graham McVicker authored 22 years ago
  
  68602efb