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- Aug 14, 2006
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Ian Longden authored
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- Aug 11, 2006
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Glenn Proctor authored
Added ability to project gene descriptions as well as names etc. Projected descriptions are currently stored the 'old' way, i.e. in the actual gene description field rather than in the info_* fields in the xref table.
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- Aug 09, 2006
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Ian Longden authored
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Ian Longden authored
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Glenn Proctor authored
Slight change in procedure: a 'master' database must now be specified. The external_dbs.txt file is loaded into this, and this in turn is compared (id and name) with the contents of the external_db table in each of the databases to be updated. If the database to be updated has any extra rows, a warning is given and the database is skipped. This should help avoid unilateral changes to external_db which haven't been commited to the external_dbs.txt file in CVS being silently overwritten and causing problems down the line.
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Glenn Proctor authored
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- Aug 08, 2006
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Web Admin authored
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- Aug 03, 2006
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Fiona Cunningham authored
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- Aug 02, 2006
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Jan-hinnerk Vogel authored
fetch_all_by_biotype added
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Felix Kokocinski authored
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Felix Kokocinski authored
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- Aug 01, 2006
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Anne Parker authored
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Anne Parker authored
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- Jul 31, 2006
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Glenn Proctor authored
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Glenn Proctor authored
Change in UNIQUE index on xref results in many more GO terms (apparently) being projected, but this is because the same GO term projected from multiple sources now gets multiple rows in the xref table, whereas before, because info_type/info_text wasn't being considered, only one row would have been created.
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- Jul 28, 2006
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Patrick Meidl authored
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Patrick Meidl authored
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Patrick Meidl authored
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Patrick Meidl authored
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Patrick Meidl authored
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Patrick Meidl authored
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Patrick Meidl authored
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Patrick Meidl authored
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- Jul 27, 2006
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Felix Kokocinski authored
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- Jul 21, 2006
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Kevin Howe authored
length as the original exon, returning undef if not (can happen when only part of the exon could be transformed)
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Glenn Proctor authored
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- Jul 19, 2006
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Ian Longden authored
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Ian Longden authored
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Glenn Proctor authored
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Patrick Meidl authored
committing intermediate state of module before rewriting it to use lightweight feature object for caching
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Kevin Howe authored
feature itself does not transform cleanly and the co-ordinates of the transformed gene are inferred from the transformed transcripts/exons.
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Glenn Proctor authored
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Glenn Proctor authored
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- Jul 17, 2006
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Ian Longden authored
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Ian Longden authored
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- Jul 12, 2006
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Eugene Kulesha authored
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- Jul 11, 2006
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Nathan Johnson authored
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- Jul 10, 2006
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Sarah Dyer authored
FlyBase genes which have names
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Leo Gordon authored
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Patrick Meidl authored
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