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- Mar 04, 2009
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Andreas Kusalananda Kähäri authored
Formatting of SYNOPSIS code. Passes unit tests.
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
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- Mar 03, 2009
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William McLaren authored
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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Andreas Kusalananda Kähäri authored
Make sure that transcripts created by the adaptor has their 'edits_enabled' set to true. This ensures that post-translational modifications takes effect, crucially translating selenocysteines into 'U' rather than into stop codons ('*').
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- Feb 25, 2009
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Albert Vilella authored
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Andreas Kusalananda Kähäri authored
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- Feb 19, 2009
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Daniel Rios authored
updated to include gene_gc attribute calculation, even not being a density feature, convenient to submit all jobs from same wrapper
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Rhoda Kinsella authored
QUERY_IDENTITY -> XREF_IDENTITY TARGET_IDENTITY -> ENSEMBL_IDENTITY QUERY_START -> XREF_START QUERY_END -> XREF_END TRANSLATION_START -> ENSEMBL_START TRANSLATION_END -> ENSEMBL_END
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- Feb 18, 2009
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Andreas Kusalananda Kähäri authored
Merging, with adaptions, of patch from Andy Yates: Changes to regular expressions for detecting multi-species databases, including multi-species compara and ancestral databases. Added method find_and_add_aliases() which in the future may be used to read species name aliases directly from the meta tables rather than having the species aliases hard-coded in this module. Tested with multi-species databases as well as with native Core databases.
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- Feb 17, 2009
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Andreas Kusalananda Kähäri authored
schema_version.
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- Feb 16, 2009
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
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Daniel Rios authored
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Ian Longden authored
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Ian Longden authored
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Ian Longden authored
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Ian Longden authored
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Ian Longden authored
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Ian Longden authored
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- Feb 11, 2009
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Andreas Kusalananda Kähäri authored
Added missed quotes.
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Glenn Proctor authored
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- Feb 10, 2009
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
Minor formatting.
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- Feb 09, 2009
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Yuan Chen authored
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- Feb 08, 2009
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Yuan Chen authored
give warning if strain is not in database or for this particular strainSlice, there is no genotype data available in new method
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- Feb 05, 2009
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Daniel Rios authored
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Daniel Rios authored
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Nathan Johnson authored
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Ian Longden authored
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Ian Longden authored
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- Feb 04, 2009
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Daniel Rios authored
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- Feb 03, 2009
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Ian Longden authored
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Ian Longden authored
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Ian Longden authored
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Albert Vilella authored
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