Commits · 1cd2d3fea5e0edd3f946c8acca454468176b1307 · ensembl-gh-mirror / ensembl

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Jun 16, 2016
- Merge pull request #137 from Ensembl/ENSCORESW-1834 · 1cd2d3fe
  Kieron Taylor authored 8 years ago
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Changes to gtf serializer to deal with offset in codon and utr reginos
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  1cd2d3fe
- Changes to gtf serializer to deal with offset in codon and utr reginos · 9899576d
  Matthew Laird authored 8 years ago
  
  9899576d
Jun 14, 2016
- Update xref_config.ini to use revised GO FTP site layout · 03f80762
  Kieron Taylor authored 8 years ago
  
  03f80762
Jun 10, 2016
- added one term to test database · 770bdb26
  Magali Ruffier authored 8 years ago
  
  770bdb26
- add test for miRNA transcript · 4b0f92b4
  Magali Ruffier authored 8 years ago
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biotype defaults to protein_coding if non provided
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  4b0f92b4
- missing mRNA biotype for transcripts · 1c64268f
  Magali Ruffier authored 8 years ago
  
  1c64268f
Jun 09, 2016
- [ENSCORESW-1763 ] Add a synonym for DBEntry->release to help people find DBEntry versions. · 9041de34
  Kieron Taylor authored 8 years ago
  
  9041de34
- CGNC source not stable enough for production use · f7f784db
  Magali Ruffier authored 8 years ago
  
  f7f784db
- Clarify documentation for Slice->get_all_synonyms() · d5c22797
  Matthew Laird authored 8 years ago
  
  d5c22797
Jun 07, 2016
- ENSCORESW-1731 : remove synonyms if not from display xref · 56025656
  Magali Ruffier authored 8 years ago
  
  56025656
- same object_xref can have several masters, distinguish in query · 01aa35f5
  Magali Ruffier authored 8 years ago
  
  01aa35f5
- copyright updater updated its own regex, doh · ef401810
  Magali Ruffier authored 8 years ago
  
  ef401810
Jun 03, 2016
- [ENSCORESW-1724] Stop users fetching slices by regions with <empty string> as... · 0fd2a2ef
  Kieron Taylor authored 8 years ago
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[ENSCORESW-1724] Stop users fetching slices by regions with <empty string> as the end coordinate. Bug allowed unbound slices.
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  0fd2a2ef
- Purge some return undef; · ec779dc8
  Kieron Taylor authored 8 years ago
  
  ec779dc8
- update EBI copyright · 67e43acd
  Magali Ruffier authored 8 years ago
  
  67e43acd
- Merge pull request #134 from Ensembl/feature/copyright2 · 293733c9
  Matthew Laird authored 8 years ago
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Corrected copyright updater to deal with multi format licenses
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  293733c9
- Revert "update to EBI copyright" · 65b327a6
  Magali Ruffier authored 8 years ago
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This reverts commit 3e24194c.
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  65b327a6
- update to EBI copyright · 3e24194c
  Magali Ruffier authored 8 years ago
  
  3e24194c
Jun 02, 2016
- Merge pull request #135 from amonida/patch-2 · ea6104ae
  Kieron Taylor authored 8 years ago
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Update TranscriptSelector.pm with new biotypes
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  ea6104ae
- Update TranscriptSelector.pm · d797a232
  Amonida Zadissa authored 8 years ago
  
  d797a232
- Merge branch 'master' of github.com:Ensembl/ensembl · 141fd39d
  Matthew Laird authored 8 years ago
  
  141fd39d
- ENSCORESW-1743 - variation test schema out of sync · 7a02eddd
  Matthew Laird authored 8 years ago
  
  7a02eddd
- ENSCORESW-1811 : file parsing broken by additional line · 0d1eee72
  Magali Ruffier authored 8 years ago
  
  0d1eee72
- Corrected copyright updater to deal with multi format licenses · bd990ed0
  Daniel Zerbino authored 8 years ago
  
  bd990ed0
- when comparing none and some, say how many is some · 97ae75c2
  Magali Ruffier authored 8 years ago
  
  97ae75c2
- ENSCORESW-1741 : add VGNC as trusted source for names and descriptions · 35edbf0b
  Magali Ruffier authored 8 years ago
  
  35edbf0b
- ENSCORESW-1741 : add VGNC source for vertebrate naming · 5453e5d3
  Magali Ruffier authored 8 years ago
  
  5453e5d3
Jun 01, 2016
- Fix for ENSCORESW-1816, bioperl's inconsistent handling of incomplete codons... · d322d934
  Matthew Laird authored 8 years ago
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Fix for ENSCORESW-1816, bioperl's inconsistent handling of incomplete codons across versions. Trim any partial codons when translating unless told not to.
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  d322d934
- Extra update to copyright notice · 54f99ebf
  Daniel Zerbino authored 8 years ago
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It's Dan Barrell's fault.
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  54f99ebf
- Revise ConnectionFAQ · 872326b9
  Kieron Taylor authored 8 years ago
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Accommodate Brandon's suggestions for clarity
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  872326b9
- Merge pull request #133 from Ensembl/feature/copyright · b4cd27de
  Kieron Taylor authored 8 years ago
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Updated copyright script for transition to EBI-only copyright
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  b4cd27de
- ncorrect default source for rat vega, not from genebuilders but from staging2 · 34acea78
  Matthew Laird authored 8 years ago
  
  34acea78
May 31, 2016
- Updated copyright script for transition to EBI-only · b40f3f36
  Daniel Zerbino authored 8 years ago
  
  b40f3f36
May 25, 2016
- New RFAM URI. · b141218f
  Alessandro Vullo authored 8 years ago
  
  b141218f
May 24, 2016
- ENSCORESW-1800 : change mim2gene source file · 4df0c22c
  Magali Ruffier authored 8 years ago
  
  4df0c22c
May 17, 2016
- Merge pull request #132 from sarahhunt/phen_ontol · 66032487
  Magali Ruffier authored 8 years ago
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store version for ontology
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  66032487
- fix the other double tab · 96433389
  Sarah Hunt authored 8 years ago
  
  96433389
- fix double tab in datafile · b1b561b7
  Sarah Hunt authored 8 years ago
  
  b1b561b7
- store version for ontology · 2d33ca7e
  Sarah Hunt authored 8 years ago
  
  2d33ca7e
- Patching test databases. · 220280d6
  Alessandro Vullo authored 8 years ago
  
  220280d6