Commits · 2d2a1274edfd37327af72d266070121c6766496f · ensembl-gh-mirror / ensembl

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Mar 24, 2005
- Tests for RegulatoryFeature.pm · 2d2a1274
  Glenn Proctor authored 20 years ago
  
  2d2a1274
- Database retrieval and storage for regulatory features. · 66853e3f
  Glenn Proctor authored 20 years ago
  
  66853e3f
- Database retrieval & storage for regulatory motifs. · f336e29a
  Glenn Proctor authored 20 years ago
  
  f336e29a
- Created; API support for motifs that are common between regulatory features. · 20ca84c5
  Glenn Proctor authored 20 years ago
  
  20ca84c5
- Created; API support for regulatory features. · 9a82a052
  Glenn Proctor authored 20 years ago
  
  9a82a052
Mar 23, 2005
- For adjacent gaps in query and target, sanity checks "warning"ed on the · 3c114152
  Kevin Howe authored 20 years ago
```
forward strand and "throw"ed on the reverse strand! Made them both
warnings.
```
  3c114152
Mar 22, 2005
- changed prepare statement to allow passing arguments (mysql_use_result) · 863c7cc9
  Daniel Rios authored 20 years ago
  
  863c7cc9
- sources for the worm · 4c9f730b
  Felix Kokocinski authored 20 years ago
  
  4c9f730b
Mar 21, 2005
- add web species aliases in the subroutine load_registry_with_web_adaptors · 053b1953
  Ian Longden authored 20 years ago
  
  053b1953
- too many my :-) · c88d573a
  Arne Stabenau authored 20 years ago
  
  c88d573a
- one comma too much... · a9d36a01
  Felix Kokocinski authored 20 years ago
  
  a9d36a01
- Allow for # entries in assembly.mapping for multiple contig bits in mapping · 5d56cb75
  Arne Stabenau authored 20 years ago
  
  5d56cb75
- adapted to new assembly test case · f06e08b9
  Arne Stabenau authored 20 years ago
  
  f06e08b9
- new test database with special assembly.mapping entry for ChainedMapper · 70d3fa07
  Arne Stabenau authored 20 years ago
  
  70d3fa07
- need to import stack_trace_dump method · a9685739
  Arne Stabenau authored 20 years ago
  
  a9685739
- small error in constructor call · 206f5120
  Arne Stabenau authored 20 years ago
  
  206f5120
Mar 18, 2005
- added missing codes, needs cleanup now · f7cad0d1
  Arne Stabenau authored 20 years ago
  
  f7cad0d1
- debugged and tested · ade933cd
  Arne Stabenau authored 20 years ago
  
  ade933cd
- added new sources and removed medline references · a60c15ae
  Ian Longden authored 20 years ago
  
  a60c15ae
- removed medline as this is the same as pubmed · 5f23d5b0
  Ian Longden authored 20 years ago
  
  5f23d5b0
Mar 15, 2005

Removed OMIM for now. As the same acc can have more than one disorder and only... · 39f79a1a

Ian Longden authored 20 years ago

Removed OMIM for now. As the same acc can have more than one disorder and only one can be stored. So disease database still needed for now

39f79a1a

Mar 14, 2005
- hugo gene names now give the descriptions, the display is the disease description · 5c913983
  Ian Longden authored 20 years ago
  
  5c913983
- MIM2 is now OMIM, also uncommented out the rest of the unigene sources · 0ff2ad00
  Ian Longden authored 20 years ago
  
  0ff2ad00
- OMIM source added which contains the disease database in the xref system · 1d858484
  Ian Longden authored 20 years ago
  
  1d858484
- Added Canine affy array as an external db. · 460d94d7
  Craig Melsopp authored 20 years ago
  
  460d94d7
- added UniGene as an external db · 1750774c
  Ian Longden authored 20 years ago
  
  1750774c
Mar 13, 2005
- create submit script for those mappings that produced problems · b98650e0
  Ian Longden authored 20 years ago
  
  b98650e0
- quick test for missing files from mapping · 13a16e95
  Ian Longden authored 20 years ago
  
  13a16e95
Mar 12, 2005
- match only translation for hugo until mart can handle translations and... · 9348d3fd
  Ian Longden authored 20 years ago
```
match only translation for hugo until mart can handle translations and transcripts. Transcript code commented out for now
```
  9348d3fd
- uncommented out unigene for human, the rest will be done if results are okay · 94499cb2
  Ian Longden authored 20 years ago
  
  94499cb2
Mar 11, 2005
- Make label = ID again, not accession. · 173a2304
  Glenn Proctor authored 20 years ago
  
  173a2304
- Check if database already exists before dropping it. · 93043844
  Glenn Proctor authored 20 years ago
  
  93043844
Mar 10, 2005
- update of logic name for vega genscans · d95eddd4
  Steve Trevanion authored 20 years ago
  
  d95eddd4
- late commit, plus addition of new logic name for vega genscans · 9ac2cd93
  Steve Trevanion authored 20 years ago
  
  9ac2cd93
Mar 09, 2005
- stop displaying DAS tracks for data objects without IDs · 46b2c141
  Eugene Kulesha authored 20 years ago
  
  46b2c141
- Merge from branch-ensembl-29 to head · 75f18f09
  Web Admin authored 20 years ago
  
  75f18f09
- Updated to version 30. · ddf8e9d5
  Glenn Proctor authored 20 years ago
  
  ddf8e9d5
Mar 08, 2005
- Fixed bug that was causing a small number of HUGO xrefs to have null labels... · 22ae58b7
  Glenn Proctor authored 20 years ago
```
Fixed bug that was causing a small number of HUGO xrefs to have null labels (hence xref displayed was numeric HGNC instead).
```
  22ae58b7
- Added a use Bio::EnsEMBL::Utils::Exception statement as some of the method e.g... · 8d6dd221
  Abel Ureta-Vidal authored 20 years ago
```
Added a use Bio::EnsEMBL::Utils::Exception statement as some of the method e.g throw from this module are used
```
  8d6dd221
- Changed ecs3 MySQL location to more stable path. · 12d4a7a1
  Glenn Proctor authored 20 years ago
  
  12d4a7a1