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- Mar 08, 2007
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Andreas Kusalananda Kähäri authored
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Sarah Dyer authored
Update schema version.
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Andreas Kusalananda Kähäri authored
store it as the release. NB: Since the release is data source specific (not species specific), if you're running the parsing step of the Xref code for more than one species, only the build number for the last species will be stored as the release of UniGene. So, keep species separate.
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
concatenated when using globbing.
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Web Admin authored
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- Mar 07, 2007
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
Call set_release() for all relevant source IDs.
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
Remove UNIQUE constraint on translation_stable_id to bring it into line with the other stable_id tables.
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
This allows us to pick up the RefSeq release documentation, which is located in a file called 'RefSeq-releaseNN.txt' (where 'NN' is the release number), by downloading 'RefSeq-release*.txt'.
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
More $self calls, no explicit base class calls.
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
Call methods through $self rather than through base class.
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Ian Longden authored
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
Beautify summary output somewhat.
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Ian Longden authored
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- Mar 06, 2007
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
Add HTML reference to file containing Interpro release info.
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Andreas Kusalananda Kähäri authored
release number. Yay!
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Andreas Kusalananda Kähäri authored
Give all files to the parser, not just the first one. The parser will have to know what order the files are in (e.g. the Interpro parser knows that the second file is a HTML file that contains release information). NB: This means that the ordering of the list of URLs in the source_url meta data table is important!
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Andreas Kusalananda Kähäri authored
than calling the run() method as a class method.
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
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Andreas Kusalananda Kähäri authored
Fixed bug that made the xref_parser.pl fall over on missing "LOCAL:" files.
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Glenn Proctor authored
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Glenn Proctor authored
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- Mar 05, 2007
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Andreas Kusalananda Kähäri authored
of BaseParser so that the file name comes last. This will soon allow some parsers to accept more than one file at a time.
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