Commits · 3e1716adbb4ad4aa5d25a54f4c47fb426123be0a · ensembl-gh-mirror / ensembl

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Apr 17, 2003
- removed some crufty test methods · 3e1716ad
  Graham McVicker authored 21 years ago
  
  3e1716ad
- DBEntryAdaptor::store changed so can no longer add external_db entries and refactored a bit · 69bacbf3
  Graham McVicker authored 21 years ago
  
  69bacbf3
- flush transcript before transform · 38b174bd
  Brian Gibbins authored 21 years ago
  
  38b174bd
Apr 16, 2003
- added new external_dbs · fc8cbda6
  Graham McVicker authored 21 years ago
  
  fc8cbda6
- removed insert_external_dbs.sql, update_external_dbs.pl script is replacement · bd21a9f8
  Graham McVicker authored 21 years ago
  
  bd21a9f8
Apr 15, 2003
- script for propogating external_db changes to all core databases · 51e3f849
  Graham McVicker authored 21 years ago
  
  51e3f849
- removed crufty scripts · 60c66623
  Graham McVicker authored 21 years ago
  
  60c66623
Apr 14, 2003
- · d5397a3c
  Laura Clarke authored 21 years ago
```
code encorporated into maps2db.pl
```
  d5397a3c
- updated for changed qtl schema, and altered feature creation criteria · 62a46912
  Graham McVicker authored 21 years ago
  
  62a46912
- *** empty log message *** · 32d5b69c
  Laura Clarke authored 21 years ago
  
  32d5b69c
- updated POD for display_xref methods, removed species methods · 2f47cd46
  Graham McVicker authored 21 years ago
  
  2f47cd46
- removed tests for species methods · 487d244b
  Graham McVicker authored 21 years ago
  
  487d244b
- whitespace change · 9acb2f1e
  Colin Kingswood authored 21 years ago
  
  9acb2f1e
Apr 11, 2003
- update for dumps · 0cc76bab
  Web Admin authored 21 years ago
  
  0cc76bab
- updated qtl code for schema changes · 5f958a11
  Graham McVicker authored 21 years ago
  
  5f958a11
- updated qtl tests · 732560c7
  Graham McVicker authored 21 years ago
  
  732560c7
- updated test db for altered qtl schema · f962e326
  Graham McVicker authored 21 years ago
  
  f962e326
- typo · 07e8d844
  Graham McVicker authored 21 years ago
  
  07e8d844
Apr 10, 2003
- stop codons are removed from translatable seq in translate(). Hopefully this... · 36adab58
  Eduardo Eyras authored 21 years ago
```
stop codons are removed from translatable seq in translate(). Hopefully this will allow us to write some genes 8-).
```
  36adab58
- fixed out-of-date pod, made some argument checking stricter (as suggested by juguang) · ea0910f3
  Graham McVicker authored 21 years ago
  
  ea0910f3
- bug fixed during trying to store the converted object into db · bb8ebce0
  juguang authored 21 years ago
  
  bb8ebce0
Apr 09, 2003
- added SQL file to load external_db table · 5360255d
  Graham McVicker authored 21 years ago
  
  5360255d
Apr 08, 2003
- made error message more useful · 02dbdff3
  Ewan Birney authored 21 years ago
  
  02dbdff3
- · 7a39bac8
  Laura Clarke authored 21 years ago
```
so tab for synonyms is entered even if none are present so maps2dbs works
```
  7a39bac8
- tested by storing converteed object. · 5c5a9acb
  juguang authored 21 years ago
  
  5c5a9acb
Apr 07, 2003
- fix: supporting evidence lost on genes transformed from slice coords to slice coords · 68339859
  Graham McVicker authored 21 years ago
  
  68339859
- Added ctg2genomic method · 1854a99c
  Will Spooner authored 21 years ago
  
  1854a99c
- fixed incorrect cdna2genomic POD · a1fedac9
  Graham McVicker authored 21 years ago
  
  a1fedac9
Apr 04, 2003
- · 488264d0
  Laura Clarke authored 21 years ago
```
a couple of fixes typos etc
```
  488264d0
- converting supporting feature for exon that is generated by genewise · fb85e2ba
  juguang authored 21 years ago
  
  fb85e2ba
- · 48ac87e6
  Laura Clarke authored 21 years ago
```
removed hard coded values
```
  48ac87e6
Apr 03, 2003
- · 5013e0ec
  Laura Clarke authored 21 years ago
```
clean up, removed cruft etc
```
  5013e0ec
- qtl processing for rat · f0b1d682
  Arne Stabenau authored 21 years ago
  
  f0b1d682
- · 68cfa520
  Laura Clarke authored 21 years ago
```
emptyied options of specific settings cleaned up a bit
```
  68cfa520
Apr 02, 2003
- parse final AGPs · df195ecb
  Simon Potter authored 22 years ago
  
  df195ecb
Apr 01, 2003
- · 9d69cb05
  Laura Clarke authored 22 years ago
```
changes so no longer relies on bioperl swisprot parser but using one inside the script
```
  9d69cb05
- *** empty log message *** · b9706008
  Emmanuel Mongin authored 22 years ago
  
  b9706008
- changes from branch · aee19bbf
  Web Admin authored 22 years ago
  
  aee19bbf
- Add get_all_by_exon_stable_id method · 2b23b974
  Web Admin authored 22 years ago
  
  2b23b974
- add max_length undefined fix · b0a78762
  Web Admin authored 22 years ago
  
  b0a78762