updates to Exon is_coding routine to handle cases where the coding region boundry falls within the exon boundry - ENSCORESW-2465

Removed special treatment for funcgen adaptors, coord systems have be…

This script has been replaced with https://github.com/Ensembl/ensembl-production/blob/master/scripts/copy_database.pl

Updates to add align_type column to dna_align_feature and protein_align_feature tables to support multiple align types and remove external_data column from dna_align_feature table - ENSCORESW-1937

Trigger builds on a selection of downstream repos (incl. rest) using TravisCI API

[ENSCORESW-2343]. Bug as we want the total number of seconds represented by the timedelta structure. Use more powerful token, encrypt it and use as global variable in the triggering script.

Added the opposite of slurp: spurt

Removed special treatment for funcgen adaptors, coord systems have been removed from funcgen databases.

Updated code dealing with flush to make sure that we don't flush source and target when noflush is turned on. Making sure to not flush target if noflushtarget is turned on

Allow translation start and stop to be defined within a transcript-level seq-edit