Commits · 547cfbabe0184f87b1e842c3c1dc5764b72fdb36 · ensembl-gh-mirror / ensembl

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Nov 26, 2012
- = does not work. We just assigned $type to 'cisred'. eq is what was wanted · 547cfbab
  Andy Yates authored 12 years ago
  
  547cfbab
Oct 17, 2011
- changes related to stable_id merge · c4827fef
  Monika Komorowska authored 13 years ago
  
  c4827fef
Nov 16, 2007
- reverted erroneous efg imports to previous core versions · 41828928
  Nathan Johnson authored 17 years ago
  
  41828928
Nov 13, 2007
- initial import of external_feature parsers · 04ef7f00
  Nathan Johnson authored 17 years ago
  
  04ef7f00
Sep 21, 2007
- Added count of how many features change co-ords due to assembly mapping. · 1955e5c0
  Glenn Proctor authored 17 years ago
  
  1955e5c0
May 03, 2007
- Print number of skipped features/regions. · 4732f408
  Glenn Proctor authored 17 years ago
  
  4732f408
Apr 02, 2007
- Make factor type default to NULL · 30313790
  Glenn Proctor authored 17 years ago
  
  30313790
Mar 27, 2007
- Fixed typo (= instead of eq) that was causing search regions to be deleted... · 6ee1217b
  Glenn Proctor authored 18 years ago
```
Fixed typo (= instead of eq) that was causing search regions to be deleted when enhancers were loaded!
```
  6ee1217b
Nov 13, 2006
- Add blank factor so that features are displayed properly. · 295dbab2
  Glenn Proctor authored 18 years ago
  
  295dbab2
- Moved get_blank_factor to BaseParser.pm so it can be used elsewhere. · 80bee16d
  Glenn Proctor authored 18 years ago
  
  80bee16d
- Moved get_blank_factor from cisred.pm · 8cf80cee
  Glenn Proctor authored 18 years ago
  
  8cf80cee
Sep 25, 2006
- *** empty log message *** · 2257afa9
  Glenn Proctor authored 18 years ago
  
  2257afa9
- Add support for positive and negative enhancer types. · 217897a6
  Glenn Proctor authored 18 years ago
  
  217897a6
- SQL fix for deletion. · 83f7373b
  Glenn Proctor authored 18 years ago
  
  83f7373b
- Start of support for LBNL Enhancer features. · 4ccc2531
  Glenn Proctor authored 18 years ago
  
  4ccc2531
- Allow features that have neither associated factors or ensembl objects (e.g. LBL Enhancers) · bc3afd58
  Glenn Proctor authored 18 years ago
  
  bc3afd58
- Reverted to v1.11 · 7054b07d
  Glenn Proctor authored 18 years ago
  
  7054b07d
Sep 12, 2006
- New version · c3d22365
  Glenn Proctor authored 18 years ago
  
  c3d22365
May 18, 2006
- Store projected seq_region_id as well. · 8118a9e7
  Glenn Proctor authored 18 years ago
  
  8118a9e7
- Added support for optionally projecting features to a different co-ordinate... · 27d89460
  Glenn Proctor authored 18 years ago
```
Added support for optionally projecting features to a different co-ordinate system before loading. UNTESTED (no data yet)
```
  27d89460
- Added support for optionally projecting features to a different co-ordinate system before loading. · bf00e555
  Glenn Proctor authored 18 years ago
  
  bf00e555
- Added project_feature() · 58d20396
  Glenn Proctor authored 18 years ago
  
  58d20396
- Added -new_assembly, -old_assembly options · 3ab94784
  Glenn Proctor authored 18 years ago
  
  3ab94784
Mar 24, 2006
- Don't try to upload search regions if there aren't any. · bbb716c4
  Glenn Proctor authored 19 years ago
  
  bbb716c4
- Only delete search regions for cisred. · e2d7f631
  Glenn Proctor authored 19 years ago
  
  e2d7f631
Feb 21, 2006
- Merged branch-mysql5 back into HEAD · 199ec320
  Glenn Proctor authored 19 years ago
  
  199ec320
Feb 10, 2006

Bug fix - the same factor was being imported multiple times if more than one... · 952bb562

Glenn Proctor authored 19 years ago

Bug fix - the same factor was being imported multiple times if more than one feature was associated with it.

Now each factor is only stored once and all features associated with it point to a single instance.

952bb562

Nov 22, 2005
- File now contains -1 or +1 for strand, not +/- · 0fa76faf
  Glenn Proctor authored 19 years ago
  
  0fa76faf
Nov 15, 2005
- Updated for simplified CisRed file format. · 3a361b11
  Glenn Proctor authored 19 years ago
  
  3a361b11
Nov 07, 2005
- Change regulatory_search_region to have an analysis_id rather than a type. · 9356042c
  Glenn Proctor authored 19 years ago
  
  9356042c
Nov 04, 2005
- Added loading of search regions. · 1f09bcec
  Glenn Proctor authored 19 years ago
  
  1f09bcec
- Added parsing of search regions. · 64dda915
  Glenn Proctor authored 19 years ago
  
  64dda915
Oct 31, 2005
- Strands are represented as +/- in cisred, convert to -1/+1 · 6935b215
  Glenn Proctor authored 19 years ago
  
  6935b215
- Now read strand from file. · 2ad4bbe2
  Glenn Proctor authored 19 years ago
  
  2ad4bbe2
Oct 25, 2005
- *** empty log message *** · ffa1d636
  Glenn Proctor authored 19 years ago
  
  ffa1d636
- Updated to deal with new way of handling cisred factors. Parsing now simpler,... · 9e52cf5e
  Glenn Proctor authored 19 years ago
```
Updated to deal with new way of handling cisred factors. Parsing now simpler, has support for features which don't have an associated factor.
```
  9e52cf5e
Sep 13, 2005
- Updated for new cisred file format in version 1.2 · 94c4e284
  Glenn Proctor authored 19 years ago
  
  94c4e284
- More informative error if missing analysis · 88a9f701
  Glenn Proctor authored 19 years ago
  
  88a9f701
Sep 08, 2005
- regulatory_feature_transcript->regulatory_feature_coding · 1e1d3d2d
  Glenn Proctor authored 19 years ago
  
  1e1d3d2d
Aug 17, 2005
- Parser for cisRed database dumps · f526ab82
  Glenn Proctor authored 19 years ago
  
  f526ab82