Commits · 634cae2506c4b94e4912cac63fdac447deca6312 · ensembl-gh-mirror / ensembl

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May 08, 2011
- adding tests for new iterator methods · 634cae25
  Graham Ritchie authored 13 years ago
  
  634cae25
May 06, 2011
- Changes for patches 62_63 a, b and c · 91aa9a30
  Monika Komorowska authored 13 years ago
  
  91aa9a30
- *** empty log message *** · 18632430
  Monika Komorowska authored 13 years ago
  
  18632430
- Applied changes for patches a,b,c for release 63. · df1b30ee
  Monika Komorowska authored 13 years ago
  
  df1b30ee
- Updated API version to 63. · 4517d0d8
  Monika Komorowska authored 13 years ago
  
  4517d0d8
May 05, 2011
- added puccinia triticina species · 8e7660f7
  Helder Pedro authored 13 years ago
  
  8e7660f7
- module for uniprot genename · 057797a0
  Helder Pedro authored 13 years ago
  
  057797a0
- Updated instructions for creating an ontology database · 36ab2d21
  Monika Komorowska authored 13 years ago
  
  36ab2d21
- Check if $end is defined in fetch_by_Slice_start_end_strand at line 149 · 8158ad72
  Monika Komorowska authored 13 years ago
  
  8158ad72
- make sure each transcript even if it is in a differernt gene have differernt... · ddc4d592
  Ian Longden authored 13 years ago
```
make sure each transcript even if it is in a differernt gene have differernt transcript ext for the same gene name
```
  ddc4d592
May 04, 2011
- fix for recalculationg display xrefs · de829dd1
  Ian Longden authored 13 years ago
  
  de829dd1
- Made SQL easier to read and processed alt alleles · adb8a66a
  Ian Longden authored 13 years ago
  
  adb8a66a
May 03, 2011
- Deleted field dbprimary_acc_linkable · 76133158
  Monika Komorowska authored 13 years ago
  
  76133158
- Add new parameter to ini file 'taxon', taxon parameter value.pm module will be · 7b8f8b9a
  Monika Komorowska authored 13 years ago
```
used to process the mappings if species.pm file is not found.
```
  7b8f8b9a
- Update schema version. · e051f2ea
  Monika Komorowska authored 13 years ago
  
  e051f2ea
Apr 28, 2011
- Stored procedure to link xrefs to genes, instead of transcripts or translations. · 3461014e
  Monika Komorowska authored 13 years ago
  
  3461014e
Apr 26, 2011
- Modified to allow component type 'O' (other sequence) in the .agp file. · 150d573e
  Susan Fairley authored 13 years ago
  
  150d573e
Apr 20, 2011
- *** empty log message *** · 4283b9b5
  Monika Komorowska authored 13 years ago
  
  4283b9b5
- Reorder $slice->is_circular tests · 98f31f35
  Monika Komorowska authored 13 years ago
  
  98f31f35
- Reorder $slice->is_circular test · 2a92c793
  Monika Komorowska authored 13 years ago
  
  2a92c793
- Reorder test $slice->is_circular · 7fd79f63
  Monika Komorowska authored 13 years ago
  
  7fd79f63
- Reorder test that contain $slice->is_circular · 4222b506
  Monika Komorowska authored 13 years ago
  
  4222b506
Apr 19, 2011
- Added procedure file parameter. · 9e77ad61
  Monika Komorowska authored 13 years ago
  
  9e77ad61
Apr 18, 2011
- Changes to is_circular method. · d03598f1
  Monika Komorowska authored 13 years ago
  
  d03598f1
- Internal method _build_circular_slice_cache added · 571f28ab
  Monika Komorowska authored 13 years ago
  
  571f28ab
- commented out problem method for gettting aliases · 3c8204c8
  Ian Longden authored 13 years ago
  
  3c8204c8
Apr 15, 2011
- Fix for massive memory usage on snpstats · fb0c8780
  William McLaren authored 13 years ago
  
  fb0c8780
- added alt allele calls ans moving certain sources to the gene level · 284231da
  Ian Longden authored 13 years ago
  
  284231da
- alt allele processing added · efc1c8f0
  Ian Longden authored 13 years ago
  
  efc1c8f0
- new process states added · 1a9c4067
  Ian Longden authored 13 years ago
  
  1a9c4067
- added ustilago maydis species · f44ce6d6
  Helder Pedro authored 13 years ago
  
  f44ce6d6
- module for uniprot genename · 3e0fd674
  Helder Pedro authored 13 years ago
  
  3e0fd674
- Test case addition to make sure we don't keep on iterating executing the... · c95e504d
  Andy Yates authored 13 years ago
```
Test case addition to make sure we don't keep on iterating executing the transaction when its been successful
```
  c95e504d
- Typo caused compilation error; fixed · cce95475
  Andy Yates authored 13 years ago
  
  cce95475
Apr 14, 2011
- Moved to subdirectory link_out · 4be7430c
  Monika Komorowska authored 13 years ago
  
  4be7430c
- Script for generating LinkOut files for the NCBI website. · 2189bb86
  Monika Komorowska authored 13 years ago
  
  2189bb86
- Bugfix which made a successful transaction be executed for the total number of retries · 9cbdb04b
  Andy Yates authored 13 years ago
  
  9cbdb04b
- Added code to fix issue with Corf genes in zebrafish. The gene names were not... · 6e7827d3
  Rhoda Kinsella authored 13 years ago
```
Added code to fix issue with Corf genes in zebrafish. The gene names were not being modified to look like hsC*orf*-like. This now works.
```
  6e7827d3
- *** empty log message *** · bd88233d
  Monika Komorowska authored 13 years ago
  
  bd88233d
- Updated the URL for OMIM file. · 116d6f38
  Monika Komorowska authored 13 years ago
  
  116d6f38