First draft of revised projections. Exclusions in place for inappropriate mammalian traits on birds and reptiles. Also platypus.

Awaiting GOA full blacklist of undesirable projections.

Removed fish from GO terms projections. Also double-checked order of execution code and added some explanatory comments.

Execution order now defined in an array, and species pairs now defined through a hash.

Replaced RefSeq_dna_predicted with Refseq_mRNA_predicted and RefSeq_ncRNA_predicted as the RefSeq_dna_predicted have been split for release 64.

Force the loading of external synonyms before getting the code to store them. Otherwise we incorrectly retrieve external synonyms from the source database with a newly assigned ID

for multiple gene numbers the zebrafish naming need to use the original name and not the modified one in future gene numbers.

Added code to fix issue with Corf genes in zebrafish. The gene names were not being modified to look like hsC*orf*-like. This now works.

Add projected xrefs to genes rather than transcripts by default if there is no equivalent type in the target database.

Added code to delete names/GO terms if the -delete_only option is specified. Added code to check whether
-registryconf is submitted as a string from the submit_projections.pl script or as a file on the command
line.

Addition of human and mouse projection to turkey plus human, mouse and danio to
stickleback.