Do not die when finding an InnoDB table, go on to the next database instead.

new script to fix mapping coordinates in asm_start, asm_end columns; don't merge or bridge gaps as this is done ordering by cmp_start in fix_cmp_overlaps.pl

don't limit seq_region to chromosomes, so the script can be used to fix overlaps in mappings between other coord_systems

fact an IP address.

only one single database *instead* of an input file.

Format of arguments (for example):

  --source=ak4_chrysemys_picta_ref@genebuild1
  --target=ak4_test@ens-research


If a special port number needs to be specified:

  --source=ak4_chrysemys_picta_ref@genebuild1:3306
  --target=ak4_test@ens-research:3306

You still need to log in on the destination/target server and run the
script as the mysqlens user.

Do not re-set $executable{$key} = $key when we have worked so hard to
set it to something usable...

Attempting to fix the issues with too many KNOWN status genes appearing in species we should not be seeing them in. UniProtParser now limits to using ACs with an evidence of 1 and 2. We now do not assign KNOWN based upon a depdendent xref when we didn't trust the parent xref. Also the loader & SQL has been edited to allow for LOWEVIDENCE types of sources.

Removing the dead dumper and adding a readme to help with remembering which one is the file we need to work with

Conflict resolved we think. 1.18 code had very odd hash assignment/caching code which should not have worked

attempting to fix