Commits · 6c8282ccd6cad408e74c10506f0f756cab924201 · ensembl-gh-mirror / ensembl

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Nov 05, 2004
- gunzip problem again (fixed) · 6c8282cc
  Ian Longden authored 20 years ago
  
  6c8282cc
- version now added to xref so that accession has no version info in it · 7ef13ad5
  Ian Longden authored 20 years ago
  
  7ef13ad5
Nov 04, 2004
- fixed last incorrect commit · 2505f2c2
  Steve Trevanion authored 20 years ago
  
  2505f2c2
- works with registry and can also dump one or more chromosomes · df45cfa0
  Steve Trevanion authored 20 years ago
  
  df45cfa0
- works with registry and can also dump one or more chromosomes · 37202884
  Steve Trevanion authored 20 years ago
  
  37202884
- copes with unusual schema for current_clone_info · a93252c9
  Steve Trevanion authored 20 years ago
  
  a93252c9
- add new directory to package etc and print stats at end · 2e0c0901
  Ian Longden authored 20 years ago
  
  2e0c0901
- force gunzip. · cf70aec5
  Ian Longden authored 20 years ago
  
  cf70aec5
- Modification to retrieval by synonym to cope with orphan marker_synonym->marker links in mouse. · 5e876921
  Glenn Proctor authored 20 years ago
```
fetch_by_dbID only warns (rather than throwing) if the dbID does not exist, and fetch_all_by_synonym only returns valid markers.
```
  5e876921
- bug fix for .gz files (introduced in last commit) · 1851438a
  Ian Longden authored 20 years ago
  
  1851438a
- use methods in BaseParser now instead of local · 4dab48e0
  Ian Longden authored 20 years ago
  
  4dab48e0
- package missed of a couple of calls, this added · 2f35ce4b
  Ian Longden authored 20 years ago
  
  2f35ce4b
- allow more than one file per parser · e1e19628
  Ian Longden authored 20 years ago
  
  e1e19628
Nov 03, 2004
- added new method to get LD values in a slice · 88553fea
  Daniel Rios authored 20 years ago
  
  88553fea
- moved some methods to BaseParser · f10ff2f5
  Ian Longden authored 20 years ago
  
  f10ff2f5
- RGD Rat Genome Database? data · 607e1d39
  Ian Longden authored 20 years ago
  
  607e1d39
- added RAT sources · eb80db08
  Ian Longden authored 20 years ago
  
  eb80db08
- added some base methods shared by other parsers · 44c5a2fb
  Ian Longden authored 20 years ago
  
  44c5a2fb
- fixed change_access · 3f09f950
  Steve Trevanion authored 20 years ago
  
  3f09f950
- change_access changed · 9f90d0b1
  Ian Longden authored 20 years ago
  
  9f90d0b1
- Added -skipdownload option to, er, skip downloading · be0c967a
  Glenn Proctor authored 20 years ago
  
  be0c967a
- modules now moved so calls needed to be changed to reflect this · 53762527
  Ian Longden authored 20 years ago
  
  53762527
- need to require new modules. Update the source data only after successful parsing · 1adbabef
  Ian Longden authored 20 years ago
  
  1adbabef
- deals with vega stable_id tables · 3e432bac
  Steve Trevanion authored 20 years ago
  
  3e432bac
- Removed debug. · 58630cbd
  Glenn Proctor authored 20 years ago
  
  58630cbd
- Proper package name for BaseParser call. · a26380bf
  Glenn Proctor authored 20 years ago
  
  a26380bf
- *** empty log message *** · c15e588a
  Glenn Proctor authored 20 years ago
  
  c15e588a
- Fixed up use statements. · 8395b5bd
  Glenn Proctor authored 20 years ago
  
  8395b5bd
- Moved here from parent dir · 94ce4a0b
  Glenn Proctor authored 20 years ago
  
  94ce4a0b
- Moved into sql directory · 3a060cc3
  Glenn Proctor authored 20 years ago
  
  3a060cc3
- Moved into XrefParser directory. Package statements adjusted · ac5ef820
  Glenn Proctor authored 20 years ago
  
  ac5ef820
- Moved into XrefParser directory · 39abca17
  Glenn Proctor authored 20 years ago
  
  39abca17
- Control script for running parsers; contains stuff that used to be in BaseParser.pm · eb80bcbc
  Glenn Proctor authored 20 years ago
  
  eb80bcbc
- Added listing of valid species and sources if an invalid one is specified. · ae1fff78
  Glenn Proctor authored 20 years ago
```
Some refactoring in preparation for upcoming package restructuring.
```
  ae1fff78
- *** empty log message *** · 4796f3df
  Glenn Proctor authored 20 years ago
  
  4796f3df
- Method that uses a gapped local affine exonerate alignment · d86a6e59
  Glenn Proctor authored 20 years ago
  
  d86a6e59
- Added dumping of external_synonym. · 241f20ef
  Glenn Proctor authored 20 years ago
```
Temporarily removed filtering out of low-identity mappings (to allow comparison with current human SwissProt mappings).
```
  241f20ef
- Removed default database connection parameters. · 69c0d1ec
  Glenn Proctor authored 20 years ago
  
  69c0d1ec
- MIM in twice so removed one of them. ens1.txt and ens2.txt added for HUGO data · 3d4a3cfa
  Ian Longden authored 20 years ago
  
  3d4a3cfa
- HUGO parser. Ref seq Accesssion check still needs to be resolved as hugo has... · 20a97bc5
  Ian Longden authored 20 years ago
```
HUGO parser. Ref seq Accesssion check still needs to be resolved as hugo has NO version numbers whereas at the moment these are stored when parsing refseq
```
  20a97bc5