Commits · 86bf89a649d036c250b12105b3e294482a53f9ef · ensembl-gh-mirror / ensembl

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Oct 31, 2011
- Updating documentation on when to run this. · 86bf89a6
  Andy Yates authored 13 years ago
  
  86bf89a6
- Addition of new species to the projection list. · e7392cb4
  Rhoda Kinsella authored 13 years ago
  
  e7392cb4
Oct 28, 2011
- Missed this checksum type · aed80644
  Andy Yates authored 13 years ago
  
  aed80644
- Bug fix · 1d912233
  Andy Yates authored 13 years ago
  
  1d912233
- Missed out a key to type flag change to let UniParc settings be parsed · 0001ae08
  Andy Yates authored 13 years ago
  
  0001ae08
- Add specific GO source (flybasego) for gene direct xrefs from FlyBase. · 76d790ae
  Gautier Koscielny authored 13 years ago
  
  76d790ae
- Add a new specific source for FlyBase GO terms (prior_descr: flybasego) · c24a37dd
  Gautier Koscielny authored 13 years ago
```
This enables to have multiple sources of GO terms. The GO terms extracted
from the GFF file will be processed as 'DIRECT' xrefs linked to genes
```
  c24a37dd
Oct 27, 2011
- Minor corrections to pass the time while waiting for the farm to do its thing. · d2679435
  Kieron Taylor authored 13 years ago
  
  d2679435
- Added the possibility to parse a user parameter to connect to the database · 488780ee
  Arnaud Kerhornou authored 13 years ago
  
  488780ee
- · 3d7248c0
  Andreas Kusalananda Kähäri authored 13 years ago
```
Add gene_score_threshold (0.125).
```
  3d7248c0
- Unify shebangs. · 67212a1d
  Andreas Kusalananda Kähäri authored 13 years ago
  
  67212a1d
Oct 26, 2011
- swap order · 67219a79
  Ian Longden authored 13 years ago
  
  67219a79
- reference -> is_ref · aec28f90
  Ian Longden authored 13 years ago
  
  aec28f90
- doc changes · ada79199
  Ian Longden authored 13 years ago
  
  ada79199
- HUGO is now HGNC · 6c6b37f6
  Ian Longden authored 13 years ago
  
  6c6b37f6
- Spelling improvements · 01f62de4
  Kieron Taylor authored 13 years ago
  
  01f62de4
Oct 25, 2011
- first draft of the document to help expalin the running of the xref system · ed3ef884
  Ian Longden authored 13 years ago
  
  ed3ef884
- example files from the xref pipeline · ac2ee655
  Ian Longden authored 13 years ago
  
  ac2ee655
Oct 24, 2011
- now in docs directory · a21e9cf0
  Ian Longden authored 13 years ago
  
  a21e9cf0
- moved to docs directory · d9c6f802
  Ian Longden authored 13 years ago
  
  d9c6f802
- Old docs removed · f905ecc9
  Ian Longden authored 13 years ago
  
  f905ecc9
- Moved to docs directory · f8e86770
  Ian Longden authored 13 years ago
  
  f8e86770
- only add direct xref if the ensembl id is okay · 48f64aca
  Ian Longden authored 13 years ago
  
  48f64aca
- sanity check · 7937b1bb
  Ian Longden authored 13 years ago
  
  7937b1bb
- unlink object xrefs doe dependents wherer the master is not the top priority · e5ad705b
  Ian Longden authored 13 years ago
  
  e5ad705b
Oct 21, 2011
- Remove the meta_key.only_for_species field and add the meta_key_species · 1b6321ef
  Andreas Kusalananda Kähäri authored 13 years ago
```
table to the SQL file.
```
  1b6321ef
Oct 20, 2011
- Added an extra source for gene and transcript names assignments · bdce78b4
  Arnaud Kerhornou authored 13 years ago
  
  bdce78b4
- Added an extra source · d38c7528
  Arnaud Kerhornou authored 13 years ago
  
  d38c7528
- Dump before sorting out meta_key.only_for_species vs. meta_key_species. · 63bf640a
  Andreas Kusalananda Kähäri authored 13 years ago
  
  63bf640a
Oct 19, 2011
- Bug fixes for deprecate detection, truncated code sections · 58af92dd
  Kieron Taylor authored 13 years ago
  
  58af92dd
- Don't confuse user with %_stable_id tables. · a7810af3
  Andreas Kusalananda Kähäri authored 13 years ago
  
  a7810af3
- Better version. · 13625bd7
  Andreas Kusalananda Kähäri authored 13 years ago
  
  13625bd7
- merged updates from 64 · 6e52ee24
  Nick Langridge authored 13 years ago
  
  6e52ee24
- Update to deal with schema 65. · 53837993
  Andreas Kusalananda Kähäri authored 13 years ago
  
  53837993
Oct 18, 2011
- Transferring Doxygen filter into EnsEMBL CVS. · 6092c0c5
  Kieron Taylor authored 13 years ago
  
  6092c0c5
Oct 17, 2011
- Remove alt_allele entry if reset_to_parsing_finished is used · 6e733773
  Ian Longden authored 13 years ago
  
  6e733773
- removed fullmode option · c8c2ac05
  Ian Longden authored 13 years ago
  
  c8c2ac05
- typo fix · ede53e95
  Ian Longden authored 13 years ago
  
  ede53e95
- remove partupdate mode · 28dea3b5
  Ian Longden authored 13 years ago
  
  28dea3b5
- changes related to stable_id merge · c400294c
  Monika Komorowska authored 13 years ago
  
  c400294c