Commits · 8933c0b73bf74e108f3417b194e140917e23bc02 · ensembl-gh-mirror / ensembl

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Mar 22, 2017
- xref sources for rodent species · 8933c0b7
  Magali Ruffier authored 8 years ago
  
  8933c0b7
- some misformatted entries in RefSeq data · 6f0b72dc
  Magali Ruffier authored 8 years ago
  
  6f0b72dc
Mar 21, 2017
- [ENSCORESW-368 ]. Talked to Web, can get rid of redundant method. · 49a5f03b
  Alessandro Vullo authored 8 years ago
  
  49a5f03b
Mar 17, 2017
- Merge pull request #186 from Zhicheng-Liu/newtask/ENSEMBL-4764 · 94373e7a
  Premanand Achuthan authored 8 years ago
```
fix: use write credentials for creating indices
```
  94373e7a
- fix: use write credentials for creating indices · 6b63c335
  Zhicheng Liu authored 8 years ago
  
  6b63c335
Mar 13, 2017
- Altered Genbank dumper so ENST is places in a: · 3c483abe
  Matthew Laird authored 8 years ago
```
/standard_name=
record rather than a /note for transcript records
JIRA ENSCORESW-1707
```
  3c483abe
Mar 03, 2017
- Merge pull request #185 from thibauthourlier/patch-2 · 5dadc75a
  Alessandro Vullo authored 8 years ago
```
Escape seq_region_name before querying the synonyms
```
  5dadc75a
Mar 02, 2017
- Try to use the driver's escape character · ae05ab86
  Thibaut Hourlier authored 8 years ago
  
  ae05ab86
- SQLite needs only one backslash where MySQL needs two · 4c1f3892
  Thibaut Hourlier authored 8 years ago
  
  4c1f3892
- Update SliceAdaptor.pm · 45b3dcac
  Thibaut Hourlier authored 8 years ago
  
  45b3dcac
- Escape seq_region_name before querying the synonyms · 95d3b25f
  Thibaut Hourlier authored 8 years ago
  
  95d3b25f
Mar 01, 2017
- Merge branch 'master' of https://github.com/Ensembl/ensembl · b8ff4706
  Magali Ruffier authored 8 years ago
  
  b8ff4706
Feb 28, 2017
- [ENSCORESW-2129 ]. Added POD. · 93fc21ed
  Alessandro Vullo authored 8 years ago
  
  93fc21ed
- ENSCORESW-2194 : throw if coordinates missing · 1320d979
  Magali Ruffier authored 8 years ago
  
  1320d979
- ENSCORESW-2195 : seq_region_start/end methods for UTR and CDS · 7db8cb4f
  Magali Ruffier authored 8 years ago
  
  7db8cb4f
- [ENSCORESW-2129 ]. Input and configuration files. · 81b78157
  Alessandro Vullo authored 8 years ago
  
  81b78157
- [ENSCORESW-2129 ]. Script to programmatically create release tasks and sub-tasks in JIRA at EBI. · c505bfaf
  Alessandro Vullo authored 8 years ago
  
  c505bfaf
Feb 27, 2017
- added separate target user/pass · 70773b12
  Dan Staines authored 8 years ago
  
  70773b12
Feb 22, 2017
- Merge pull request #184 from james-monkeyshines/master · 861ce71b
  Alessandro Vullo authored 8 years ago
```
Do not skip first mapping when making chain file
```
  861ce71b
- Merge pull request #182 from willmclaren/master · b5c334e3
  Alessandro Vullo authored 8 years ago
```
Fix in mapper for insertion SeqEdits
```
  b5c334e3
Feb 15, 2017
- update example with new ftp url · 1cdcb3a6
  Magali Ruffier authored 8 years ago
  
  1cdcb3a6
- Do not skip first mapping · e429feb5
  James Allen authored 8 years ago
  
  e429feb5
- use port from config · 212f2d02
  Magali Ruffier authored 8 years ago
  
  212f2d02
Feb 14, 2017
- Merge branch 'master' of https://github.com/Ensembl/ensembl · 57bfe61a
  Magali Ruffier authored 8 years ago
  
  57bfe61a
- use port from configuration · 16191d64
  Magali Ruffier authored 8 years ago
  
  16191d64
- Merge pull request #183 from willmclaren/feature/generic-seqregionsynonym-adaptor · b1a8772c
  Alessandro Vullo authored 8 years ago
```
Make SeqRegionSynonymAdaptor compatible with BaseAdaptor
```
  b1a8772c
- Make SeqRegionSyonymAdaptor compatible with BaseAdaptor · 2e48625a
  William McLaren authored 8 years ago
  
  2e48625a
Feb 08, 2017
- Updated README for stable_id_lookup to include -create_index option · 8bf4ff23
  premanand17 authored 8 years ago
  
  8bf4ff23
- updated README to include -create_index option · 9d8aebad
  premanand17 authored 8 years ago
  
  9d8aebad
- Merge branch 'master' of https://github.com/Ensembl/ensembl · d6e65df5
  Magali Ruffier authored 8 years ago
  
  d6e65df5
- new EBI server settings · 2cedd120
  Magali Ruffier authored 8 years ago
  
  2cedd120
- ENSCORESW-369 : column count was wrong · 36385517
  Magali Ruffier authored 8 years ago
  
  36385517
- Updated tables.sql to remove index creation while creating tables and README · a7e1e960
  premanand17 authored 8 years ago
  
  a7e1e960
Feb 07, 2017
- ENSCORESW-1731 : remove mislinked synonyms · 59951a73
  Magali Ruffier authored 8 years ago
  
  59951a73
- add new staging port, not 3306 any more · 6773339c
  Magali Ruffier authored 8 years ago
  
  6773339c
- Merge branch 'master' of https://github.com/Ensembl/ensembl · 1d2458fa
  Magali Ruffier authored 8 years ago
  
  1d2458fa
- add port, defaults to staging one · 580643d7
  Magali Ruffier authored 8 years ago
  
  580643d7
- ignore some dodgy transcript names · 1031368f
  Magali Ruffier authored 8 years ago
  
  1031368f
- ENSCORESW-369 : checksum the checksum correctly · 04f19024
  Magali Ruffier authored 8 years ago
  
  04f19024
Feb 01, 2017
- Merge pull request #181 from epaule/master · 6a1a2678
  Alessandro Vullo authored 8 years ago
```
Protein Feature patch
```
  6a1a2678