Commits · 9873f458faf1ed4a3311390fc0d81a4af3da4c91 · ensembl-gh-mirror / ensembl

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Jun 28, 2011
- Added RNAMMER and TRANSCAN_SE to the list of sources to move to the gene level · 9873f458
  Arnaud Kerhornou authored 13 years ago
  
  9873f458
- Added RNAMMEr and TRANSCAN_SE to the list of sources for gene descriptions;... · 57f8d5e1
  Arnaud Kerhornou authored 13 years ago
```
Added RNAMMEr and TRANSCAN_SE to the list of sources for gene descriptions; added a method called set_source_id_to_external_name
```
  57f8d5e1
- Test has been testing the wrong number. Changed test 18 to expect latest stable ID of 3. · 5ae4c16f
  Kieron Taylor authored 13 years ago
  
  5ae4c16f
- Need to check aliases but no warning if first time · 95477171
  Ian Longden authored 13 years ago
  
  95477171
Jun 27, 2011
- Updated patch identifiers in the meta table. · df1115b1
  Monika Komorowska authored 13 years ago
  
  df1115b1
- Added reconnect_when_lost subroutine · 34a58512
  Monika Komorowska authored 13 years ago
  
  34a58512
- Ping the db handle on prepare and do, if reconnect_when_lost is set to 1. · c8f90a02
  Monika Komorowska authored 13 years ago
  
  c8f90a02
- Added method 'set_reconnect_when_lost' · 2236861b
  Monika Komorowska authored 13 years ago
  
  2236861b
Jun 24, 2011
- bug fix for uniprot genename having same display and accession · 3dd5f4a4
  Ian Longden authored 13 years ago
  
  3dd5f4a4
- bug fix for uniprot genename having same display and accession · 02101f1c
  Ian Longden authored 13 years ago
  
  02101f1c
- add synoyms for dependents · fb9a8697
  Ian Longden authored 13 years ago
  
  fb9a8697
- bug fix for uniprot genename having same display and accession · ed058bae
  Ian Longden authored 13 years ago
  
  ed058bae
Jun 23, 2011
- Removed temporary version of populate_production_db_tables.pl · 323f2943
  Monika Komorowska authored 13 years ago
  
  323f2943
- Dumping backup tables out to a file. · 78440c4f
  Monika Komorowska authored 13 years ago
  
  78440c4f
- Added a test for output directory · 6e5e0fb1
  Monika Komorowska authored 13 years ago
  
  6e5e0fb1
- New script for submitting density feature jobs · 80c7932e
  Monika Komorowska authored 13 years ago
  
  80c7932e
- Changes for submit_density_features.pl script · 43554d01
  Monika Komorowska authored 13 years ago
  
  43554d01
- Changed parameter names in density feature scripts · a60cc9ea
  Monika Komorowska authored 13 years ago
  
  a60cc9ea
- added POD for fetch_Iterator_by_Slice · 26ace380
  Nathan Johnson authored 13 years ago
  
  26ace380
Jun 22, 2011
- Test for dependencies on Variation, Funcgen or Compara modules in Core modules. · 5c965f5e
  Monika Komorowska authored 13 years ago
  
  5c965f5e
- Updated to load GL accession as a synonym of the patch scaffold/supercontig. · 54a327d0
  Susan Fairley authored 13 years ago
  
  54a327d0
- Added 1000genomes populations, minimumnumber of observations and also includes LRG transcripts · 35e9f364
  Pontus Larsson authored 13 years ago
  
  35e9f364
- look for assembled and component overlaps · 14066c44
  Ian Longden authored 13 years ago
  
  14066c44
- Updated store method to set stable id version to 1 if it's undefined. · 75297b92
  Monika Komorowska authored 13 years ago
  
  75297b92
- Updated store method to set stable id version to 1 if it's undefined. · 17d6bdfb
  Monika Komorowska authored 13 years ago
  
  17d6bdfb
- Fixed a HTML tag error · 86f724fb
  Laurent Gil authored 13 years ago
  
  86f724fb
- Updated store method to set stable id version to 1 if it's undefined. · 2f22d315
  Monika Komorowska authored 13 years ago
  
  2f22d315
Jun 21, 2011
- Add a link to the colour legend · c9e637c2
  Laurent Gil authored 13 years ago
  
  c9e637c2
- Remove the Variation Bio::EnsEMBL::Variation::Utils::Constants import · 60a277ec
  Laurent Gil authored 13 years ago
  
  60a277ec
- - Add a new optional @colour tag, to colour the tables (if you want to be... · dc04b7bc
  Laurent Gil authored 13 years ago
```
- Add a new optional @colour tag, to colour the tables (if you want to be consistent with colours used in your database schema).
- Add a colour legend at the bottom of the HTML page, if colours are found.
- You can disable this feature using the option '-c 0'
```
  dc04b7bc
Jun 20, 2011

Updated code to get the list of taxIds from xref_config.ini and check the... · dd6e4d73

Arnaud Kerhornou authored 13 years ago

Updated code to get the list of taxIds from xref_config.ini and check the PHIbase mapping based on all returned taxIds rather then just the spiecies_id

dd6e4d73

Jun 17, 2011
- Update the 'get_all_StructuralVariations' method · 8577e57b
  Laurent Gil authored 13 years ago
  
  8577e57b
Jun 16, 2011
- Added new sources, ncRNA::EG and PHIbase, added new species Nectria · 33196725
  Arnaud Kerhornou authored 13 years ago
  
  33196725
- PHIbase parser · 95c6c885
  Arnaud Kerhornou authored 13 years ago
  
  95c6c885
- Added specific display_xrefs behaviour for species nectria · 1c0f0439
  Arnaud Kerhornou authored 13 years ago
  
  1c0f0439
Jun 14, 2011
- now actually uses Iterator · 3148cd29
  Nathan Johnson authored 13 years ago
  
  3148cd29
Jun 13, 2011
- fixed NR issue with fetch_all_by_dbID_list · ad0538cf
  Nathan Johnson authored 13 years ago
  
  ad0538cf
Jun 10, 2011
- tweaks to automatic logging · de639b78
  Steve Trevanion authored 13 years ago
  
  de639b78
Jun 09, 2011
- Remain Pod tweaks. Majority of errors removed ready for Doxygen · 9dacbe88
  Kieron Taylor authored 13 years ago
  
  9dacbe88
- Guess what? Pod messed up · 2c9685da
  Kieron Taylor authored 13 years ago
  
  2c9685da