Commits · 98f6e460a1ea8bf461eec71c3477a8c37158f5fc · ensembl-gh-mirror / ensembl

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May 19, 2005
- Modified remove_from_Slice to optionally take an attribute type id (which · 98f6e460
  Kevin Howe authored 20 years ago
  98f6e460
May 18, 2005
- Added RefSeq_dna_predicted & RefSeq_peptide_predicted to priority list (below... · 6516b3ff
  Glenn Proctor authored 20 years ago
  6516b3ff
- ia64gh added · 451ff5f1
  Jan-hinnerk Vogel authored 20 years ago
  
  451ff5f1
- delete existing changed · 8fce0849
  Ian Longden authored 20 years ago
  
  8fce0849
- Fix to " stripping. · 4b6c7fd5
  Glenn Proctor authored 20 years ago
  
  4b6c7fd5
- Slight change to description filtering logic; use original unfiltered... · 3107f149
  Glenn Proctor authored 20 years ago
  3107f149
May 17, 2005
- changes from branch-vega-30-dev · aba8ca2c
  Patrick Meidl authored 20 years ago
  
  aba8ca2c
- deleteexisting will only delete the sources which are being updated · cbfefbe1
  Ian Longden authored 20 years ago
  
  cbfefbe1
May 16, 2005
- wrong function name spelling in test, was never run? · 94922226
  Arne Stabenau authored 20 years ago
  
  94922226
- feature filtering wasnt working correctly and returned too many features in some cases · 93d0ae6d
  Arne Stabenau authored 20 years ago
  
  93d0ae6d
- add description · 245299e1
  Ian Longden authored 20 years ago
  
  245299e1
- swissprot in trembl file aswell so no need to download both · a01a34b2
  Ian Longden authored 20 years ago
  
  a01a34b2
May 12, 2005
- added missed mgi file · 8e3ef3c2
  Ian Longden authored 20 years ago
  
  8e3ef3c2
May 10, 2005
- triage stuff. added ensembl stable id names · 0769798b
  Ian Longden authored 20 years ago
  
  0769798b
May 09, 2005
- Added methods for drosophila-specific logic for building gene and transcript display_xrefs. · 7d714a80
  Glenn Proctor authored 20 years ago
  
  7d714a80
May 05, 2005
- xref-parsing for types mRNA ncRNA snRNA tRNA rRNA pseudogene added · 8beeb430
  Jan-hinnerk Vogel authored 20 years ago
  
  8beeb430
- gadfly external sources added · 008cd97a
  Jan-hinnerk Vogel authored 20 years ago
  
  008cd97a
- meta-data for drosophila melanogaster added · 321c866d
  Jan-hinnerk Vogel authored 20 years ago
  
  321c866d
- Locuslink replaced by EnrezGene in the order for gene/transcript names · 7b960dab
  Ian Longden authored 20 years ago
  
  7b960dab
- parsing of flybase GFF v.3 to add FBxx-ids, synonyms, names · c1397b32
  Jan-hinnerk Vogel authored 20 years ago
  
  c1397b32
- added method upload_direct_xrefs · 6f407bc3
  Jan-hinnerk Vogel authored 20 years ago
  
  6f407bc3
May 04, 2005
- fix from arne so that multiple hit # mappings work in 2 step mappings · e98a646c
  Martin Hammond authored 20 years ago
  
  e98a646c
May 03, 2005
- report mistranslation as a warning rather than an error so do_XXX_dump utilities don't crash · f728dddd
  Web Admin authored 20 years ago
  
  f728dddd
- typo fixed · 5b920688
  Ian Longden authored 20 years ago
  
  5b920688
- Added first go at adding triage stuff i.e. why some refseq and uniprot... · f84e1cb2
  Ian Longden authored 20 years ago
  f84e1cb2
- Add informative descriptions for direct mappings too. · d081561a
  Glenn Proctor authored 20 years ago
  
  d081561a
Apr 29, 2005
- Check-in before shutdown; draft parser for Gareth Wilson's Affy data. Very much a work in progress! · cbb014a3
  Glenn Proctor authored 20 years ago
  
  cbb014a3
- sources for drosophila added · 8882e885
  Jan-hinnerk Vogel authored 20 years ago
  
  8882e885
- Fixed POD typo · efc52b58
  Will Spooner authored 20 years ago
  
  efc52b58
- Fixed POD typo · 9d6eb011
  Will Spooner authored 20 years ago
  
  9d6eb011
- Added get_all_homologous_Genes to Bio::EnsEMBL::Gene that returns the... · c10d0eaa
  Will Spooner authored 20 years ago
  c10d0eaa
Apr 28, 2005
- Description .sql file needs semicolons ... · 40c93554
  Glenn Proctor authored 20 years ago
  
  40c93554
- Updated to reflect the fact that gene descriptions are now held in the gene... · a7c0fe84
  Glenn Proctor authored 20 years ago
  a7c0fe84
Apr 27, 2005
- cleanup option added to remove source data files after parsing · 6e316823
  Ian Longden authored 20 years ago
  
  6e316823
- use FULL uniprot files and not species specific .SPC files. Okay this will be... · 5d3f9ff4
  Ian Longden authored 20 years ago
  5d3f9ff4
Apr 26, 2005
- option -result_only added which only shows dbname when there's also a resultset returned by the · 6592d33a
  Jan-hinnerk Vogel authored 20 years ago
  6592d33a
- make sure that we use the most uptodate copy of the refseqs possible for rat,mouse and zebrafish · 60666d27
  Ian Longden authored 20 years ago
  
  60666d27
Apr 25, 2005
- Simple script to calculate what percentage of genes have associated regulatory features. · 4040048e
  Glenn Proctor authored 20 years ago
  
  4040048e
- Bug fix: some transcript display_xrefs weren't being assigned correctly if the... · fd415f3c
  Glenn Proctor authored 20 years ago
  fd415f3c
- Store synonyms as well as primary xref accessions in get_valid_codes (needed... · cf34f244
  Glenn Proctor authored 20 years ago
  cf34f244