Commits · a3b34a83120e0b898ffd918787936c671508e7ef · ensembl-gh-mirror / ensembl

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Jul 29, 2005
- merged from branch-ensembl-32 · 338a5e3c
  Web Admin authored 19 years ago
  
  338a5e3c
- Added support for storing associated Ensembl objects in store() method. · e472227a
  Glenn Proctor authored 19 years ago
  
  e472227a
Jul 25, 2005
- removed warn · 2fec6d35
  Web Admin authored 19 years ago
  
  2fec6d35
- fixed printing · c17771a3
  Web Admin authored 19 years ago
  
  c17771a3
- fixed · 1513aecf
  Web Admin authored 19 years ago
  
  1513aecf
Jul 22, 2005
- missed a lower case forcing of species. Now fixed · 5c611bde
  Ian Longden authored 19 years ago
  
  5c611bde
Jul 20, 2005
- Updated for new database. · b5db57ae
  Glenn Proctor authored 19 years ago
  
  b5db57ae
- add upstream/downstream flanking 5kb around transcript when consider a... · 5aa3583b
  Yuan Chen authored 19 years ago
```
add upstream/downstream flanking 5kb around transcript when consider a variation is involved in the transcript
```
  5aa3583b
- Removed debug. · 4ac75038
  Glenn Proctor authored 19 years ago
  
  4ac75038
- Change test type to one that's allowed. · 70dffc69
  Glenn Proctor authored 19 years ago
  
  70dffc69
- Fixes to reflect new test db · bc8c502d
  Glenn Proctor authored 19 years ago
  
  bc8c502d
- Typo · 5fa40e2e
  Glenn Proctor authored 19 years ago
  
  5fa40e2e
- *** empty log message *** · 4148873a
  Glenn Proctor authored 19 years ago
  
  4148873a
- Bug fix · 52416b7f
  Glenn Proctor authored 19 years ago
  
  52416b7f
- Tweaks · 77ab0df7
  Glenn Proctor authored 19 years ago
  
  77ab0df7
- Fixed a couple of tests. · 0106dea0
  Glenn Proctor authored 19 years ago
  
  0106dea0
- Aaaagh removed backticks from mysqldump output SQL to get it to parse better · fb07a5dc
  Glenn Proctor authored 19 years ago
  
  fb07a5dc
- Removed guff from mysqldump'ed files · 41eb3e97
  Glenn Proctor authored 19 years ago
  
  41eb3e97
- RegulatoryMotif->RegulatoryFactor · abe6d7e1
  Glenn Proctor authored 19 years ago
  
  abe6d7e1
- Replaced old-style regulatory features etc with new schema version · e7af1c99
  Glenn Proctor authored 19 years ago
  
  e7af1c99
- Factor->motif · 0ac676fe
  Glenn Proctor authored 19 years ago
  
  0ac676fe
- Renamed from *motif* · 0df84302
  Glenn Proctor authored 19 years ago
  
  0df84302
- Renamed to regulatoryFactorAdaptor.t · 8054e841
  Glenn Proctor authored 19 years ago
  
  8054e841
- Renamed to regulatoryFactor.t · 511c780e
  Glenn Proctor authored 19 years ago
  
  511c780e
- Removed influence. · eedece7b
  Glenn Proctor authored 19 years ago
  
  eedece7b
- Updated for new schema. · 0767f7b0
  Glenn Proctor authored 19 years ago
  
  0767f7b0
- Updated for recent schema change · a06dd694
  Glenn Proctor authored 19 years ago
  
  a06dd694
- Formerly RegulatoryMotif.pm · afaa7e12
  Glenn Proctor authored 19 years ago
  
  afaa7e12
- Reverted previous mistaken commit · 9b07fd26
  Glenn Proctor authored 19 years ago
  
  9b07fd26
- Formerly RegulatoryMotifAdaptor.pm · 999ab33c
  Glenn Proctor authored 19 years ago
  
  999ab33c
- Moved to RegulatoryFactorAdaptor.pm · a641c2b9
  Glenn Proctor authored 19 years ago
  
  a641c2b9
- Renamed to RegulatoryFactor.pm · aec8a3c0
  Glenn Proctor authored 19 years ago
  
  aec8a3c0
Jul 18, 2005
- tidy up slice_site setting · 2ed9f3c1
  Yuan Chen authored 19 years ago
  
  2ed9f3c1
Jul 14, 2005
- Changed calculation of end_phase so that it is (a) consistent with the · 354c799b
  Kevin Howe authored 19 years ago
```
method documentation, and (b) correct.
```
  354c799b
Jul 13, 2005
- added the way to calculate splice site change caused by allele change · becd2dfc
  Yuan Chen authored 19 years ago
  
  becd2dfc
- get_all_DBAdaptors returns an array, so deal with it as such · cae216e2
  Ian Longden authored 19 years ago
  
  cae216e2
Jul 08, 2005
- fixed add_new_track that assumed that get_all_DBAdaptors returns an array · 3f5300f8
  Eugene Kulesha authored 19 years ago
  
  3f5300f8
Jul 01, 2005
- get_all_DBAdaptors has optional species and group pairs. POD stuff updated also · 0c96aa04
  Ian Longden authored 19 years ago
  
  0c96aa04
Jun 30, 2005
- merged adaptors removed · a3ad0eb5
  Ian Longden authored 19 years ago
  
  a3ad0eb5
- merged adaptors removed and more docs added. load_registry_with_web_adaptors... · b3e3219d
  Ian Longden authored 19 years ago
```
merged adaptors removed and more docs added. load_registry_with_web_adaptors deprecated as new web does not allow this to work anymore, but Use load_registry_from_db can now be used instead
```
  b3e3219d