Commits · a8fa445555ecdf1b2203ffd2dc4334249f3784ee · ensembl-gh-mirror / ensembl

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Sep 20, 2007
- test changes for addition of external_db_id and hcoverage to XXXalignfeatures. · a8fa4455
  Ian Longden authored 17 years ago
  
  a8fa4455
- missed tab in go_xref.txt file. fixed · 06990b34
  Ian Longden authored 17 years ago
  
  06990b34
- reasons for unmapped markers · 17e9047e
  Simon White authored 17 years ago
  
  17e9047e
Sep 19, 2007
- useful SQL for stable ID mapping · 26eb8b87
  Patrick Meidl authored 17 years ago
  
  26eb8b87
- final version as used for dumping assembly AgamP3 genebuild4 · 8b69c511
  Martin Hammond authored 17 years ago
  
  8b69c511
Sep 18, 2007
- Reverted previous change. · 8c3a49ee
  Glenn Proctor authored 17 years ago
  
  8c3a49ee
- Change POSIX import to prevent it importing unused functions (e.g. remove... · c704855a
  Glenn Proctor authored 17 years ago
```
Change POSIX import to prevent it importing unused functions (e.g. remove which conflicts with the remove method defined in Gene).
```
  c704855a
- HUGO -> HGNC · 4ae266af
  Ian Longden authored 17 years ago
  
  4ae266af
- ncRNA now have a species sub directory so that all species can be done in one directory/database · 037576d9
  Ian Longden authored 17 years ago
  
  037576d9
Sep 17, 2007
- do not create the same object xrefs for go again. There is now a hadh to sort these out · d453579d
  Ian Longden authored 17 years ago
  
  d453579d
- Removed debug. · 480d55ca
  Glenn Proctor authored 17 years ago
  
  480d55ca
Sep 14, 2007
- logging improvements · 75f6f745
  Patrick Meidl authored 17 years ago
  
  75f6f745
- catch division by zero exception · bfdb73b8
  Patrick Meidl authored 17 years ago
  
  bfdb73b8
- fixed SyntenyRegion sorting · 286390ee
  Patrick Meidl authored 17 years ago
  
  286390ee
- added autoload capabilities · 8dd423fb
  Patrick Meidl authored 17 years ago
  
  8dd423fb
- fixed autoloading bug in constructor · 989f9356
  Patrick Meidl authored 17 years ago
  
  989f9356
- added matrix autoload capabilities · d5455aeb
  Patrick Meidl authored 17 years ago
  
  d5455aeb
- also add normal gene stats to summary email · c3ae0887
  Patrick Meidl authored 17 years ago
  
  c3ae0887
- fixed autoloading bug in constructor · 61f871fc
  Patrick Meidl authored 17 years ago
  
  61f871fc
- added checkpoints to mapping · 0bbdfe3c
  Patrick Meidl authored 17 years ago
  
  0bbdfe3c
- fixed major scoring bug; improved logging · 5e56a432
  Patrick Meidl authored 17 years ago
  
  5e56a432
- cosmetic changes · 10a628a2
  Patrick Meidl authored 17 years ago
  
  10a628a2
- minor fixes · ba135486
  Patrick Meidl authored 17 years ago
  
  ba135486
- don't dump files that already exist; check if table is empty before loading new data · 8066c56b
  Patrick Meidl authored 17 years ago
  
  8066c56b
- added functionality to automatically create logfile names; simplyfied progress/progressbar logging · 6a759a5d
  Patrick Meidl authored 17 years ago
  
  6a759a5d
- added --logauto, correctly deal with quotes in parameter values · dc589cfb
  Patrick Meidl authored 17 years ago
  
  dc589cfb
- better accurracy in parse_bytes() · 4d02c865
  Patrick Meidl authored 17 years ago
  
  4d02c865
- added --logauto, upload mode and some debug prints · a1469e71
  Patrick Meidl authored 17 years ago
  
  a1469e71
- adapted perl path · afbb9e1c
  Patrick Meidl authored 17 years ago
  
  afbb9e1c
- added --logauto · fc0eca4b
  Patrick Meidl authored 17 years ago
  
  fc0eca4b
- added --lsf to submit itself to lsf, and --logauto to automatically generate a unique logfile name · 566a1fc5
  Patrick Meidl authored 17 years ago
  
  566a1fc5
- more configurable options · f1d581ea
  Patrick Meidl authored 17 years ago
  
  f1d581ea
- lots of changes to include all toplevel seq_regions, some bugfixes · 8347ed8f
  Patrick Meidl authored 17 years ago
  
  8347ed8f
- Fixed the type of OTTP entry · 0690ac8d
  Julio Fernandez Banet authored 17 years ago
  
  0690ac8d
Sep 13, 2007
- spelling error fixed · 3ebc04a6
  James Gilbert authored 17 years ago
  
  3ebc04a6
- copy hgnc gene names to the 'canonical' transcript · 12859188
  Ian Longden authored 17 years ago
  
  12859188
- Added missing PDB source · c007f5cb
  Ian Longden authored 17 years ago
  
  c007f5cb
- Added OTTP entry · 1c3cd16b
  Julio Fernandez Banet authored 17 years ago
  
  1c3cd16b
Sep 12, 2007
- new links for ensembl <-> vega · 3aeeec6a
  Steve Trevanion authored 17 years ago
  
  3aeeec6a
- fix bug when variation in boundaries of slice · 2ef3ca42
  Daniel Rios authored 17 years ago
  
  2ef3ca42