Registry: add support for versioned ensembl_metadata DBs [master]

appris method on Transcript

See ENSCORESW-3119. If both a versioned and an unversioned database are
present, use the versioned one if the version number matches that of the
software.

Store web_data without newlines

Changed attribute code length to 14 characters.

Add support for stop codon readthrough as a type of edit. 

Code updated to implement review comments. There is a new package to handle stop codon readthrough in a sequence. Test case has been updated with new regex

Marek Szuba authored 5 years ago and Shamika Mohanan committed 5 years ago

The previous test-database update missed some patches for the core and
variation schemas, which is why Travis jobs keep failing these days.

ENSCORESW-3110- Code to handle stop codon readthrough in 12 transcripts. The code edits the amino acid sequence to display the stop codon readthrough with an X

[ENSCORESW-3077] Travis: Unify configuration of Slack notifications

add feature_so_term to Slice.pm, as was added to Feature.pm

Patch test databases for release 97, part 2 [master]

Code updated to implement review comments. There is a new package to handle stop codon readthrough in a sequence. Test case has been updated with new regex

Merge remote-tracking branch 'origin/bugfix/e97_testdb_patches_master' into feature/stop_codon_readthrough_edit
This merge will update the schema to version 97 for feature/stop_codon_readthrough_edit

The previous test-database update missed some patches for the core and
variation schemas, which is why Travis jobs keep failing these days.

ENSCORESW-3110- Code to handle stop codon readthrough in 12 transcripts. The code edits the amino acid sequence to display the stop codon readthrough with an X

Add support for mature RNA products of transcripts (e.g. MicroRNA) to the API and schema

See ENSCORESW-3054. Only really affects the test suite at this point,
in the code proper the prefix only appears in docstrings.