Commits · bad5394f076c137c0388631550ae1dc034640e60 · ensembl-gh-mirror / ensembl

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Jun 29, 2006
- ditag analysis entry, again · bad5394f
  Felix Kokocinski authored 18 years ago
  
  bad5394f
- ditag analysis entry · c56d617f
  Felix Kokocinski authored 18 years ago
  
  c56d617f
- improved fetch_by_slice method · 5485a8fd
  Felix Kokocinski authored 18 years ago
  
  5485a8fd
Jun 28, 2006
- Removed ditag as it doesn't have seq_region_* · c2ef12ea
  Glenn Proctor authored 18 years ago
  
  c2ef12ea
- Correct patch version. · 45d9c3e3
  Glenn Proctor authored 18 years ago
  
  45d9c3e3
- Schema version patch. · 4919b40d
  Glenn Proctor authored 18 years ago
  
  4919b40d
- Add schema version patch. · 52488935
  Glenn Proctor authored 18 years ago
  
  52488935
- Change oligo_feature.analysis_id to be int(10) unsigned. Should have been part of patch_39_40_a.sql · f630f688
  Glenn Proctor authored 18 years ago
  
  f630f688
- Add meta table entry for patch_39_40_h.sql (already applied). · 2610bd36
  Glenn Proctor authored 18 years ago
  
  2610bd36
- Added trailing $ to file matching regexp so (e.g.) emacs backup files... · 5e9412e9
  Glenn Proctor authored 18 years ago
```
Added trailing $ to file matching regexp so (e.g.) emacs backup files (patch_39_40_a.sql~) are not considered to be valid patches.
```
  5e9412e9
- include ditag tables · 26d4fbfa
  Felix Kokocinski authored 18 years ago
  
  26d4fbfa
- Patch to add ditag and ditag_feature tables. · e4934c3d
  Glenn Proctor authored 18 years ago
  
  e4934c3d
- Added ditag & ditag_feature tables, plus relevant patch line. · 215e961d
  Glenn Proctor authored 18 years ago
  
  215e961d
- added DitagFeature Adaptor · 6cc4d939
  Felix Kokocinski authored 18 years ago
  
  6cc4d939
- added ditag tables · dd714c5f
  Felix Kokocinski authored 18 years ago
  
  dd714c5f
- added notes about writing patches · b3d75c93
  Patrick Meidl authored 18 years ago
  
  b3d75c93
- test functions for the ditag modules · 394a5a13
  Felix Kokocinski authored 18 years ago
  
  394a5a13
- db adaptors for ditag and aligned ditag-feature modules · 99843ad8
  Felix Kokocinski authored 18 years ago
  
  99843ad8
- modules to handle ditags and aligned ditag-features in ensembl · 1c762e92
  Felix Kokocinski authored 18 years ago
  
  1c762e92
Jun 27, 2006
- Added RNA pseudogene counts; contribute to GeneNo_RNA_pseu attribute. · 4c54e14c
  Glenn Proctor authored 18 years ago
  
  4c54e14c
- added a few more lines to explain how to use the schema_patch.pl script with variation databases · 8ec5f251
  Daniel Rios authored 18 years ago
  
  8ec5f251
- added option to use it with ensembl-variation databases · 6a7b0dee
  Daniel Rios authored 18 years ago
  
  6a7b0dee
- *** empty log message *** · 9653915a
  Glenn Proctor authored 18 years ago
  
  9653915a
- Changed to store intron number in *gene*. · c3f89435
  Glenn Proctor authored 18 years ago
  
  c3f89435
- Stop it complaining about uninitialised value. · 4cf661d2
  Glenn Proctor authored 18 years ago
  
  4cf661d2
- Store intron number as attribute value instead of intron length. · 4a519c20
  Glenn Proctor authored 18 years ago
```
Also delete existing frameshift attributes by default.
```
  4a519c20
Jun 26, 2006
- Better handling and reporting of files in (e.g. .zip) archives. · 5f99ae5f
  Glenn Proctor authored 18 years ago
  
  5f99ae5f
- Cope with commas in descriptions in file. · 07f5326b
  Glenn Proctor authored 18 years ago
  
  07f5326b
Jun 23, 2006
- Typo in Illumina human URLs · 7b75aa54
  Glenn Proctor authored 18 years ago
  
  7b75aa54
- Add mouse Illumina files. · b940bdb2
  Glenn Proctor authored 18 years ago
  
  b940bdb2
- Add URLs for Illumina gene expression chips (human) · 5cde52d8
  Glenn Proctor authored 18 years ago
  
  5cde52d8
- Cope with file format of Illumina Gene Expression data files. · bb538a34
  Glenn Proctor authored 18 years ago
  
  bb538a34
- removed error message checks · cacd94d1
  Ian Longden authored 18 years ago
  
  cacd94d1
- changed -m bc_host to -R select[linux] as bc_hosts no longer in use · 96916d74
  Ian Longden authored 18 years ago
  
  96916d74
- Parser for parsing data from Illumina tab-separated files. · 3ac3e7ee
  Glenn Proctor authored 18 years ago
  
  3ac3e7ee
- Support .zip files, and # notation for specifying which file to use from the zip file. · 6eec47a7
  Glenn Proctor authored 18 years ago
  
  6eec47a7
Jun 22, 2006
- Lowered priority of ZFIN_xpat xrefs, so below ZFIN_ID. · 3af7fc82
  Ian Sealy authored 18 years ago
  
  3af7fc82
- Proper behaviour on status of XrefMapper/spe_cies.pm: · 210649fd
  Kevin Howe authored 18 years ago
```
 - not there: use BasicMapper.pm
 - there, but does not "require" successfully: death
```
  210649fd
- · 38c095f6
  Laura Clarke authored 18 years ago
```
to get the macaque xrefs to work
```
  38c095f6
- Update API version to 40. · 56b5c72a
  Glenn Proctor authored 18 years ago
  
  56b5c72a