Commits · bf4e040cc57b0ac9031b26dc40c13a5a9fcb74f9 · ensembl-gh-mirror / ensembl

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Jul 10, 2006
- be laconic :) · bf4e040c
  Leo Gordon authored 18 years ago
  
  bf4e040c
- bug fix to cope with empty db passwords · 79d8611c
  Patrick Meidl authored 18 years ago
  
  79d8611c
- Correct information for AedesGenBank (missing tab) · d438775d
  Karyn Megy authored 18 years ago
  
  d438775d
- merge from branch-vega-38-dev · 40880d0f
  Steve Trevanion authored 18 years ago
  
  40880d0f
Jul 09, 2006
- unmapped object fixes · 96abe777
  Ian Longden authored 18 years ago
  
  96abe777
Jul 07, 2006
- merge from branch-vega-38-dev · cf1904c3
  Steve Trevanion authored 18 years ago
  
  cf1904c3
- Widen marker_synonym.name. · 7433ea82
  Glenn Proctor authored 18 years ago
  
  7433ea82
- Added VB-array · a3804f10
  Martin Hammond authored 18 years ago
  
  a3804f10
- Extend marker_synonym.name to 50 chars to cope with longer synonyms in mouse. · e453fa95
  Glenn Proctor authored 18 years ago
  
  e453fa95
- added Illumina source · 86d01f59
  Ian Longden authored 18 years ago
  
  86d01f59
Jul 06, 2006
- removed unreliable fetch_grouped function · c1c287bd
  Felix Kokocinski authored 18 years ago
  
  c1c287bd
- added method to fetch total extend of mapped ditag · 865fd799
  Felix Kokocinski authored 18 years ago
  
  865fd799
- added method to fetch total extend of mapped ditag · 485046e6
  Felix Kokocinski authored 18 years ago
  
  485046e6
- silly type , instead of a ; may of had serious side effects · e9a4e550
  Ian Longden authored 18 years ago
  
  e9a4e550
- removed debug die command · 3a1f746a
  Ian Longden authored 18 years ago
  
  3a1f746a
Jul 05, 2006
- Add external Db for Aedes (AedesGenBank - id.7159) · d8810d1a
  Karyn Megy authored 18 years ago
  
  d8810d1a
- Add more reasons for unmapping (threshold limits) · d1c262b9
  Karyn Megy authored 18 years ago
  
  d1c262b9
- New parser for AedesGenBank xrefs · 54966aa4
  Karyn Megy authored 18 years ago
  
  54966aa4
- New module for Aedes xref mapping · 4423fda6
  Karyn Megy authored 18 years ago
  
  4423fda6
- Update Aedes xrefs · 018ca64e
  Karyn Megy authored 18 years ago
  
  018ca64e
- Loop over all transcripts, rather than gene by gene, as it's much faster. · c3c2b9e2
  Glenn Proctor authored 18 years ago
  
  c3c2b9e2
- change splice_site and regulation_region to type · 582a9a84
  Yuan Chen authored 18 years ago
  
  582a9a84
- *** empty log message *** · dbbd0e94
  Glenn Proctor authored 18 years ago
  
  dbbd0e94
- Now use API rather than direct SQL. Creates a transcript attribute for each... · 10c1f71c
  Glenn Proctor authored 18 years ago
```
Now use API rather than direct SQL. Creates a transcript attribute for each frameshift intron, the value of the attribute being the number of the intron in the transcript, starting from 1.
```
  10c1f71c
- Doc fix. · 771abd71
  Glenn Proctor authored 18 years ago
  
  771abd71
Jul 04, 2006
- stable Id mapping ported to perl · 687ad4c2
  Patrick Meidl authored 18 years ago
  
  687ad4c2
- object cache for stable Id mapping · 536254dd
  Patrick Meidl authored 18 years ago
  
  536254dd
- some script utilities (configuration parsing, logging and various other stuff) · ed2f3ec0
  Patrick Meidl authored 18 years ago
  
  ed2f3ec0
- Now takes into account the possibility of no DNA (or protein) reference · bd4334cc
  Kevin Howe authored 18 years ago
```
sequences
```
  bd4334cc
- added Stickleback · 3fad7820
  Simon White authored 18 years ago
  
  3fad7820
- Added elephant, armadillo, rabbit, tenrec, cat · 48491029
  Kevin Howe authored 18 years ago
  
  48491029
Jul 03, 2006
- Now just change linkage_type to IEA, don't add it to existing one. · c1dbe6ef
  Glenn Proctor authored 18 years ago
  
  c1dbe6ef
Jun 30, 2006
- Replaced space with tab in frameshift attribute · a40a8c43
  Kevin Howe authored 18 years ago
  
  a40a8c43
Jun 29, 2006
- Add information for Aedes xref · 5da1f284
  Karyn Megy authored 18 years ago
  
  5da1f284
- mainly typos · 1c86bb45
  Felix Kokocinski authored 18 years ago
  
  1c86bb45
- modules/t/ditag.t · 33e2e5d3
  Felix Kokocinski authored 18 years ago
  
  33e2e5d3
- ditag analysis entry, again · bad5394f
  Felix Kokocinski authored 18 years ago
  
  bad5394f
- ditag analysis entry · c56d617f
  Felix Kokocinski authored 18 years ago
  
  c56d617f
- improved fetch_by_slice method · 5485a8fd
  Felix Kokocinski authored 18 years ago
  
  5485a8fd
Jun 28, 2006
- Removed ditag as it doesn't have seq_region_* · c2ef12ea
  Glenn Proctor authored 18 years ago
  
  c2ef12ea