Values will be tested in healthchecks.

This will be tested in healthchecks instead, to prevent loading blanks for unknown types.

When called by list_stable_ids() (in e.g. GeneAdaptor) and we're dealing
with a multi-species database, we need to also join with the base
feature table since the stable_id tables do not have seq_region_ids.

Solves a problem raised on the dev list.

Changing from the || test to a ternary statement due to an error raised by EG & the EST pipeline when migrating from v1.136 to v1.37 of this file. If this does not solve it then it must be the throw above which has caused it.

Doh!

Option is off by default and can be turned on by using the flag -include_duplicates

Formatting.

Add penalty when source and target are not on the same seq_region
(currently halves the score).

that I remmeber where I'm at tomorrow... or the next day.

sorex_araneus

just as is done for adding source.

If the table (either xref or object_xref) is empty, $max_val will be
undefined.  Make sure that we substitute 1 for it in this case when
calling add_meta_pair().

Use -s to determine if a file previously fetched is not only there but
also if it's non-empty.  If the file is empty, unlink it and fetch it
again.

Also, clean-up.

schema version to 64 too.