Commits · c0513e9478ca020be8c859520d6dd11e0110b496 · ensembl-gh-mirror / ensembl

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Jun 06, 2011
- removed some comments · c0513e94
  Nathan Johnson authored 13 years ago
  
  c0513e94
- corrected local vs sr check for overlap splice on fetch_Iterator_by_Slice · 5da89472
  Nathan Johnson authored 13 years ago
  
  5da89472
- corrected 0 start on slice · 317f7fe8
  Nathan Johnson authored 13 years ago
  
  317f7fe8
Jun 05, 2011
- Added update to avoid recreating analysis snpdensity · d620e795
  Daniel Sobral authored 13 years ago
  
  d620e795
- Added constraint to avoid fetching transcript variations on LRG transcripts · 1713447b
  Pontus Larsson authored 13 years ago
  
  1713447b
Jun 03, 2011
- added BaseFeatureAdaptor fetch_Iterator tests · 607efca2
  Nathan Johnson authored 13 years ago
  
  607efca2
- overlapping exon check bug fix · c2f4a16a
  Ian Longden authored 13 years ago
  
  c2f4a16a
Jun 02, 2011
- Added extra biotype · a1e0f0f1
  Daniel Sobral authored 13 years ago
  
  a1e0f0f1
- for multiple gene numbers the zebrafish naming need to use the original name... · d70bcb8c
  Ian Longden authored 13 years ago
```
for multiple gene numbers the zebrafish naming need to use the original name and not the modified one in future gene numbers.
```
  d70bcb8c
- Update the get_all_StructuralVariations and get_all_CopyNumberVariantProbes methods · cbd2209e
  Laurent Gil authored 13 years ago
  
  cbd2209e
Jun 01, 2011
- Fixed small bug concerning the name of the tables · 7d445fa5
  Laurent Gil authored 13 years ago
  
  7d445fa5
- Ian modified code to deal with name change for Corf genes when there are one to many. · 600f9d5a
  Rhoda Kinsella authored 13 years ago
  
  600f9d5a
- Changed regular expression for Corf gene names. Now using \w · 011c6b50
  Rhoda Kinsella authored 13 years ago
  
  011c6b50
- Linked xrefs to genes for 3 more external dbs. · 11a550ad
  Monika Komorowska authored 13 years ago
  
  11a550ad
- Fix bug that was causing no names to be projected in species other than zebrafish. · 8b50f7e8
  Glenn Proctor authored 13 years ago
  
  8b50f7e8
- *** empty log message *** · e59b6a8a
  Rhoda Kinsella authored 13 years ago
  
  e59b6a8a
- Added change to ZFIN regular expression for Corf gene names · 712e4b09
  Rhoda Kinsella authored 13 years ago
  
  712e4b09
May 26, 2011

CCDS -> Ensembl transcript is not a one to one mapping so cannot use a key... · b9458db0

Ian Longden authored 13 years ago

CCDS -> Ensembl transcript is not a one to one mapping so cannot use a key value pairs in hash. Hence now the hash uses a anonymous array to stire multiple values

b9458db0

May 25, 2011
- Some redundant Lite references removed from commented out tests. · 52e726a1
  Kieron Taylor authored 13 years ago
  
  52e726a1
- Additional references to Ensembl::Lite removed · 15c55521
  Kieron Taylor authored 13 years ago
  
  15c55521
- Removing ancient Ensembl::Lite package that is neither used nor functional · bb9171f3
  Kieron Taylor authored 13 years ago
  
  bb9171f3
- added / to uniprot search to make sure we do not link to uniprot_genename · 400b9e14
  Ian Longden authored 13 years ago
  
  400b9e14
May 24, 2011
- add the synonyms · 454cac5d
  Ian Longden authored 13 years ago
  
  454cac5d
- return the xref_id of the newly created xref · 82a2218d
  Ian Longden authored 13 years ago
  
  82a2218d
- print the number of synonyms added too as this is usefull · 6558f5cc
  Ian Longden authored 13 years ago
  
  6558f5cc
- Deleted data for dbprimary_acc_linkable. · 25d9b4fd
  Monika Komorowska authored 13 years ago
  
  25d9b4fd
- release changed from 62 -> 63 · 08baaff1
  Ian Longden authored 13 years ago
  
  08baaff1
- better messages and tidy · 371f52bc
  Ian Longden authored 13 years ago
  
  371f52bc
- Added confirmation before overwriting a file. · 4baae37e
  Monika Komorowska authored 13 years ago
  
  4baae37e
- Tables are dumped out to a specified directory. · bf474587
  Monika Komorowska authored 13 years ago
  
  bf474587
- Set label to the description · c4e623e1
  Ian Longden authored 13 years ago
  
  c4e623e1
- Add synonyms · 95304162
  Ian Longden authored 13 years ago
  
  95304162
- fix for unmapped xref having possible multiple masters having same index · 16615a5a
  Ian Longden authored 13 years ago
  
  16615a5a
- set info_text to null instead of empty string · 09a6c22e
  Ian Longden authored 13 years ago
  
  09a6c22e
- Better messaging and tidy · d1180ed6
  Ian Longden authored 13 years ago
  
  d1180ed6
May 23, 2011
- Updated link to xref schema pdf. · 540d4a30
  Monika Komorowska authored 13 years ago
  
  540d4a30
May 19, 2011
- *** empty log message *** · b90be6b4
  Monika Komorowska authored 13 years ago
  
  b90be6b4
- Fixed dump out option. · ab3ac58a
  Monika Komorowska authored 13 years ago
  
  ab3ac58a
May 18, 2011
- Added option to dump out backup tables. · 0b006002
  Monika Komorowska authored 13 years ago
  
  0b006002
- Script for killing mysql processes by db name pattern. · 473c7216
  Monika Komorowska authored 13 years ago
  
  473c7216