Commits · ce5aa54a1cd0141d0db919ae52d378eaa2d00112 · ensembl-gh-mirror / ensembl

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Mar 31, 2005
- Removed wormbase info as this will now be obtained only from the wormbase file · ce5aa54a
  Ian Longden authored 19 years ago
  
  ce5aa54a
Mar 30, 2005
- allow for undef returned as mapper from AssemblyMapperAdaptor · 3eacfbc0
  Arne Stabenau authored 19 years ago
  
  3eacfbc0
- Added missing directories · df3df556
  Glenn Proctor authored 19 years ago
  
  df3df556
- added WormPepParser docs · 94077fdd
  Ian Longden authored 19 years ago
  
  94077fdd
Mar 29, 2005
- use correct source or web will not recognise it · 5c7874c1
  Ian Longden authored 19 years ago
  
  5c7874c1
- reworked to work correctly · d5b9c845
  Ian Longden authored 19 years ago
  
  d5b9c845
- add labels for wormpep · 95f6428a
  Ian Longden authored 19 years ago
  
  95f6428a
- add dependent xref if worm transcript not found and swissprot is given · 6c49467b
  Ian Longden authored 19 years ago
  
  6c49467b
- Cannot parse files with 17 million bases, so removed these huge files · 341f3fe6
  Ian Longden authored 19 years ago
  
  341f3fe6
- tidy up · 9d6ca20c
  Ian Longden authored 19 years ago
  
  9d6ca20c
- case sensetivity issue fixed · 55d4ecc3
  Ian Longden authored 19 years ago
  
  55d4ecc3
Mar 24, 2005
- wormBase stuff added · f27e3298
  Ian Longden authored 20 years ago
  
  f27e3298
- Work still needed on WormPepParser to add if not found and has a swissprot acc. · 112ed948
  Ian Longden authored 20 years ago
  
  112ed948
- wormpep file added. Aswell as other RefSeq entries split into seperate loads · 44dfa0cc
  Ian Longden authored 20 years ago
  
  44dfa0cc
- *** empty log message *** · c06c2c8f
  Glenn Proctor authored 20 years ago
  
  c06c2c8f
- Added fetch_all_by* methods. · 137d91cc
  Glenn Proctor authored 20 years ago
  
  137d91cc
- Added fetch_all_regulatory_features() · 77990c6d
  Glenn Proctor authored 20 years ago
  
  77990c6d
- Added test for fetch_all_regulatory_features() · b589d3d2
  Glenn Proctor authored 20 years ago
  
  b589d3d2
- Added tables & test data for regulatory features etc · 7233245a
  Glenn Proctor authored 20 years ago
  
  7233245a
- Added RegualtoryFeature and RegulatoryMotif to list for generating adaptors automatically.. · 3c0542b4
  Glenn Proctor authored 20 years ago
  
  3c0542b4
- Added support for regulatory features. · 0d96d99a
  Glenn Proctor authored 20 years ago
  
  0d96d99a
- Tests for RegulatoryMotifAdaptor.pm · e3297cdc
  Glenn Proctor authored 20 years ago
  
  e3297cdc
- Tests for RegulatoryFeatureAdaptor.pm · a6425c76
  Glenn Proctor authored 20 years ago
  
  a6425c76
- Tests for RegulatoryMotif.pm · a137d4cd
  Glenn Proctor authored 20 years ago
  
  a137d4cd
- Tests for RegulatoryFeature.pm · 2d2a1274
  Glenn Proctor authored 20 years ago
  
  2d2a1274
- Database retrieval and storage for regulatory features. · 66853e3f
  Glenn Proctor authored 20 years ago
  
  66853e3f
- Database retrieval & storage for regulatory motifs. · f336e29a
  Glenn Proctor authored 20 years ago
  
  f336e29a
- Created; API support for motifs that are common between regulatory features. · 20ca84c5
  Glenn Proctor authored 20 years ago
  
  20ca84c5
- Created; API support for regulatory features. · 9a82a052
  Glenn Proctor authored 20 years ago
  
  9a82a052
Mar 23, 2005
- For adjacent gaps in query and target, sanity checks "warning"ed on the · 3c114152
  Kevin Howe authored 20 years ago
```
forward strand and "throw"ed on the reverse strand! Made them both
warnings.
```
  3c114152
Mar 22, 2005
- changed prepare statement to allow passing arguments (mysql_use_result) · 863c7cc9
  Daniel Rios authored 20 years ago
  
  863c7cc9
- sources for the worm · 4c9f730b
  Felix Kokocinski authored 20 years ago
  
  4c9f730b
Mar 21, 2005
- add web species aliases in the subroutine load_registry_with_web_adaptors · 053b1953
  Ian Longden authored 20 years ago
  
  053b1953
- too many my :-) · c88d573a
  Arne Stabenau authored 20 years ago
  
  c88d573a
- one comma too much... · a9d36a01
  Felix Kokocinski authored 20 years ago
  
  a9d36a01
- Allow for # entries in assembly.mapping for multiple contig bits in mapping · 5d56cb75
  Arne Stabenau authored 20 years ago
  
  5d56cb75
- adapted to new assembly test case · f06e08b9
  Arne Stabenau authored 20 years ago
  
  f06e08b9
- new test database with special assembly.mapping entry for ChainedMapper · 70d3fa07
  Arne Stabenau authored 20 years ago
  
  70d3fa07
- need to import stack_trace_dump method · a9685739
  Arne Stabenau authored 20 years ago
  
  a9685739
- small error in constructor call · 206f5120
  Arne Stabenau authored 20 years ago
  
  206f5120