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- Jul 31, 2013
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Alessandro Vullo authored
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Alessandro Vullo authored
Removed some Slice overridden get_all_(Feature) methods since features/slices spanning the origin of replication are handled the corresponding feature adaptor
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Alessandro Vullo authored
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- Jul 30, 2013
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Andy Yates authored
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Magali Ruffier authored
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Magali Ruffier authored
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Andy Yates authored
Modified the enum on object_xref from 72->73 patch c and the redump re-did some data. Such as choosing a different encoding for some very small values. All changes are small though.
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Andy Yates authored
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Andy Yates authored
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Magali Ruffier authored
now fully testing patches and haplotypes
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Magali Ruffier authored
allows testing on patches and similar
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Alessandro Vullo authored
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Alessandro Vullo authored
Check feature out of destination slice. SimpleFeatureAdaptor debugged in the negative strand slice case
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Kieron Taylor authored
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Magali Ruffier authored
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Magali Ruffier authored
assembly tables, fundamental tables and feature tables also added meta keys for 73 patches
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Alessandro Vullo authored
Removed methods get_all_(Genes|Transcripts|Exons|Attributes) which weren't doing the correct thing in case of slices and features spanning the origin of replication
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Alessandro Vullo authored
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Alessandro Vullo authored
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Alessandro Vullo authored
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- Jul 29, 2013
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Andy Yates authored
[ENSCORESW-550]. Made the pipeline run on the new farm infrastructure by editting memory requirements. The original version had memory requirements in KB. New farm infrastructure says we specify in MB. This is good so now all memory requirement params are all in the same order of magnitude. The final collection job now specifies its memory requirements. This is a good thing again. Currently this is set to 5MB.
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Kieron Taylor authored
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Alessandro Vullo authored
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Kieron Taylor authored
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Kieron Taylor authored
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Kieron Taylor authored
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Kieron Taylor authored
Introduced a new method to supply a proper DBAdaptor for when we're not writing raw SQL copies everywhere.
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Alessandro Vullo authored
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- Jul 26, 2013
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Kieron Taylor authored
Xref->db isn't actually an ensembl dba as per convention, it's actually an Xref special object. Trying to spin up an adaptor manually.
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Kieron Taylor authored
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Kieron Taylor authored
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- Jul 25, 2013
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Kieron Taylor authored
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Magali Ruffier authored
splitting up step by step
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Magali Ruffier authored
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Kieron Taylor authored
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- Jul 24, 2013
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Kieron Taylor authored
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Kieron Taylor authored
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Magali Ruffier authored
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Magali Ruffier authored
all ensembl species should now have the same list of 14 sources, + any species-specific ones they may have
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Arnaud Kerhornou authored
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